Transcript: Human XM_017026350.1

PREDICTED: Homo sapiens zinc finger protein 583 (ZNF583), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF583 (147949)
Length:
2069
CDS:
147..1856

Additional Resources:

NCBI RefSeq record:
XM_017026350.1
NBCI Gene record:
ZNF583 (147949)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017026350.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000428063 ACATTCCACCAGGATACAATC pLKO_005 636 CDS 100% 10.800 15.120 N ZNF583 n/a
2 TRCN0000413401 GCAAACTTGGCGCAACATAAG pLKO_005 903 CDS 100% 10.800 15.120 N ZNF583 n/a
3 TRCN0000222149 GCTTGGTATCATTGGGAGTTT pLKO.1 268 CDS 100% 4.950 6.930 N ZNF583 n/a
4 TRCN0000427965 GGAGCAAGACATCTTAGTTAT pLKO_005 459 CDS 100% 13.200 10.560 N ZNF583 n/a
5 TRCN0000416081 AGGTACATCTTAGTCAATTAA pLKO_005 553 CDS 100% 15.000 10.500 N ZNF583 n/a
6 TRCN0000222148 GCCTTTAGTAATGGTTCATTT pLKO.1 1140 CDS 100% 13.200 9.240 N ZNF583 n/a
7 TRCN0000222150 CCACATCAAATCAGTTGCCAA pLKO.1 1813 CDS 100% 2.640 1.848 N ZNF583 n/a
8 TRCN0000222152 CATAGGAAAGTCTATGTAGAA pLKO.1 750 CDS 100% 0.495 0.347 N ZNF583 n/a
9 TRCN0000222151 GCCCTGATTGGGAGTATGTAT pLKO.1 373 CDS 100% 5.625 3.375 N ZNF583 n/a
10 TRCN0000016730 CTGGAGAGAAACCTTATGAAT pLKO.1 1606 CDS 100% 5.625 2.813 Y ZNF345 n/a
11 TRCN0000159805 GAATGTAATGTTTGTGGGAAA pLKO.1 1623 CDS 100% 4.050 2.025 Y ZNF470 n/a
12 TRCN0000243782 TGGAGAGAAACCCTATGAATA pLKO_005 935 CDS 100% 13.200 6.600 Y Zfp977 n/a
13 TRCN0000284687 TACAGGAGAGAAACCTTATAA pLKO_005 1184 CDS 100% 15.000 7.500 Y Zfp984 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017026350.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05006 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_05006 pLX_304 0% 100% 100% V5 n/a
Download CSV