Transcript: Human XM_017026351.2

PREDICTED: Homo sapiens zinc finger protein 583 (ZNF583), transcript variant X9, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF583 (147949)
Length:
2341
CDS:
548..2128

Additional Resources:

NCBI RefSeq record:
XM_017026351.2
NBCI Gene record:
ZNF583 (147949)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017026351.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000428063 ACATTCCACCAGGATACAATC pLKO_005 908 CDS 100% 10.800 15.120 N ZNF583 n/a
2 TRCN0000413401 GCAAACTTGGCGCAACATAAG pLKO_005 1175 CDS 100% 10.800 15.120 N ZNF583 n/a
3 TRCN0000222149 GCTTGGTATCATTGGGAGTTT pLKO.1 445 5UTR 100% 4.950 6.930 N ZNF583 n/a
4 TRCN0000427965 GGAGCAAGACATCTTAGTTAT pLKO_005 731 CDS 100% 13.200 10.560 N ZNF583 n/a
5 TRCN0000416081 AGGTACATCTTAGTCAATTAA pLKO_005 825 CDS 100% 15.000 10.500 N ZNF583 n/a
6 TRCN0000222148 GCCTTTAGTAATGGTTCATTT pLKO.1 1412 CDS 100% 13.200 9.240 N ZNF583 n/a
7 TRCN0000222150 CCACATCAAATCAGTTGCCAA pLKO.1 2085 CDS 100% 2.640 1.848 N ZNF583 n/a
8 TRCN0000222152 CATAGGAAAGTCTATGTAGAA pLKO.1 1022 CDS 100% 0.495 0.347 N ZNF583 n/a
9 TRCN0000016730 CTGGAGAGAAACCTTATGAAT pLKO.1 1878 CDS 100% 5.625 2.813 Y ZNF345 n/a
10 TRCN0000159805 GAATGTAATGTTTGTGGGAAA pLKO.1 1895 CDS 100% 4.050 2.025 Y ZNF470 n/a
11 TRCN0000243782 TGGAGAGAAACCCTATGAATA pLKO_005 1207 CDS 100% 13.200 6.600 Y Zfp977 n/a
12 TRCN0000284687 TACAGGAGAGAAACCTTATAA pLKO_005 1456 CDS 100% 15.000 7.500 Y Zfp984 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017026351.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05006 pDONR223 100% 90.7% 87% None (many diffs) n/a
2 ccsbBroad304_05006 pLX_304 0% 90.7% 87% V5 (many diffs) n/a
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