Construct: ORF ccsbBroadEn_05152

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015105.1_s300c1, BRDN0000388382
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SSBP4 (170463)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 170463 SSBP4 single stranded DNA binding... NM_032627.5 100% 100%
2 human 170463 SSBP4 single stranded DNA binding... NM_001009998.4 94.2% 94.2% 366_367ins66
3 human 170463 SSBP4 single stranded DNA binding... XM_005259790.3 92.9% 88.4% (many diffs)
4 human 170463 SSBP4 single stranded DNA binding... XM_006722666.2 88.5% 86.6% 1129_1243del;1271_1305del
5 human 170463 SSBP4 single stranded DNA binding... XM_017026437.1 87.5% 83.1% (many diffs)
6 human 170463 SSBP4 single stranded DNA binding... XM_006722668.2 83.4% 81.6% 366_367ins66;1063_1177del;1205_1239del
7 human 170463 SSBP4 single stranded DNA binding... XM_006722665.4 82.7% 77.2% (many diffs)
8 human 170463 SSBP4 single stranded DNA binding... XM_017026433.1 73.9% 72.7% (many diffs)
9 human 170463 SSBP4 single stranded DNA binding... XM_017026432.1 69.9% 68.1% (many diffs)
10 human 170463 SSBP4 single stranded DNA binding... XM_017026431.1 69.7% 65.5% (many diffs)
11 human 170463 SSBP4 single stranded DNA binding... XM_017026436.1 69.6% 68.5% (many diffs)
12 human 170463 SSBP4 single stranded DNA binding... XM_017026435.1 65.8% 63.9% (many diffs)
13 human 170463 SSBP4 single stranded DNA binding... XM_017026434.2 65.6% 61.4% (many diffs)
14 human 170463 SSBP4 single stranded DNA binding... XR_936163.3 61.5% (many diffs)
15 human 170463 SSBP4 single stranded DNA binding... XR_936164.3 57.9% (many diffs)
16 mouse 76900 Ssbp4 single stranded DNA binding... NM_001372473.1 81.6% 81% (many diffs)
17 mouse 76900 Ssbp4 single stranded DNA binding... NM_133772.3 80.5% 83.6% (many diffs)
18 mouse 76900 Ssbp4 single stranded DNA binding... NM_001372475.1 76.4% 79.2% (many diffs)
19 mouse 76900 Ssbp4 single stranded DNA binding... XM_006509790.4 76.3% 74.5% (many diffs)
20 mouse 76900 Ssbp4 single stranded DNA binding... XM_011242337.3 76.1% 75.7% (many diffs)
21 mouse 76900 Ssbp4 single stranded DNA binding... NM_001372471.1 75.2% 76.8% (many diffs)
22 mouse 76900 Ssbp4 single stranded DNA binding... NM_001372472.1 75.2% 76.8% (many diffs)
23 mouse 76900 Ssbp4 single stranded DNA binding... NM_001372470.1 75.1% 78% (many diffs)
24 mouse 76900 Ssbp4 single stranded DNA binding... XM_030243848.1 71.3% 72.6% (many diffs)
25 mouse 76900 Ssbp4 single stranded DNA binding... XM_011242338.3 71.2% 73.9% (many diffs)
26 mouse 76900 Ssbp4 single stranded DNA binding... NM_001372468.1 70.4% 71.9% (many diffs)
27 mouse 76900 Ssbp4 single stranded DNA binding... XM_011242336.3 69.2% 66.3% (many diffs)
28 mouse 76900 Ssbp4 single stranded DNA binding... NM_001372469.1 66.8% 68% (many diffs)
29 mouse 76900 Ssbp4 single stranded DNA binding... NM_001372477.1 58.6% 59.5% (many diffs)
30 mouse 76900 Ssbp4 single stranded DNA binding... NM_001372478.1 58.6% 59.5% (many diffs)
31 mouse 76900 Ssbp4 single stranded DNA binding... NM_001372479.1 58.6% 59.5% (many diffs)
32 mouse 76900 Ssbp4 single stranded DNA binding... NR_164176.1 57.1% (many diffs)
33 mouse 76900 Ssbp4 single stranded DNA binding... NM_001372476.1 54.6% 54.1% (many diffs)
34 mouse 76900 Ssbp4 single stranded DNA binding... NR_164178.1 53.4% (many diffs)
35 mouse 76900 Ssbp4 single stranded DNA binding... NR_164177.1 53.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1221
ORF length:
1155
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTA CGCCAAGGGG GGCAAGGGTT CGGCCGTGCC CTCCGACAGC CAGGCCCGCG
121AGAAGTTGGC GCTGTACGTT TATGAGTACC TGCTGCACAT CGGTGCCCAG AAGTCAGCCC
181AGACCTTCCT GTCTGAGATC CGATGGGAGA AGAACATCAC GCTGGGGGAG CCCCCTGGGT
241TCCTGCACTC CTGGTGGTGC GTCTTCTGGG ACCTGTACTG CGCGGCGCCT GACAGAAGAG
301AGGCCTGCGA GCACTCCGGC GAGGCCAAGG CCTTCCAGGA CTATAGTGCT GCAGCCGCCC
361CCAGCCCCGT TATGGGGAGT ATGGCCCCAG GTGACACAAT GGCCGCAGGC TCCATGGCGG
421CTGGCTTCTT CCAGGGCCCC CCCGGCTCCC AGCCGTCCCC CCACAACCCC AACGCCCCCA
481TGATGGGGCC TCACGGTCAG CCCTTCATGT CACCGCGCTT CCCAGGGGGC CCCCGGCCCA
541CCCTGCGGAT GCCGAGTCAG CCTCCCGCAG GCCTCCCTGG CTCCCAGCCC CTCCTCCCTG
601GCGCCATGGA GCCCTCCCCA CGAGCCCAGG GGCATCCGAG CATGGGCGGC CCAATGCAGA
661GGGTGACGCC TCCTCGTGGC ATGGCCAGCG TGGGGCCCCA GAGCTATGGA GGTGGCATGC
721GACCCCCACC CAACTCCCTC GCCGGCCCAG GCCTGCCTGC CATGAACATG GGCCCAGGAG
781TTCGTGGCCC GTGGGCCAGC CCCAGTGGAA ACTCGATCCC CTACTCCTCC TCATCCCCCG
841GCAGCTACAC CGGACCCCCA GGAGGAGGTG GGCCCCCTGG AACACCCATC ATGCCTAGCC
901CTGGAGATTC CACCAACTCC AGCGAAAACA TGTACACTAT CATGAACCCC ATCGGGCAGG
961GCGCCGGCAG GGCTAATTTC CCGCTCGGCC CTGGCCCGGA GGGCCCCATG GCCGCCATGA
1021GCGCGATGGA GCCTCACCAC GTGAACGGAT CCCTGGGCTC GGGCGACATG GACGGGTTGC
1081CGAAGAGTTC CCCCGGCGCC GTGGCCGGCC TGAGCAACGC CCCGGGCACC CCGCGGGACG
1141ACGGCGAGAT GGCGGCCGCC GGGACCTTCC TGCACCCGTT CCCGAGCGAA AGCTACTCGC
1201CAGGGATGAC CATGAGCGTG TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1261attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)