Construct: ORF ccsbBroadEn_05254

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017692.1_s300c1, BRDN0000393715
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZUP1 (221302)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 221302 ZUP1 zinc finger containing ubiq... NM_001361189.1 100% 100%
2 human 221302 ZUP1 zinc finger containing ubiq... NM_145062.3 100% 100%
3 human 221302 ZUP1 zinc finger containing ubiq... NR_154588.1 78.1% 1_260del;1571_1572insGTAAA;1990_2206del
4 human 221302 ZUP1 zinc finger containing ubiq... NR_154586.1 74% 1_260del;1408_1409ins97;1898_2114del
5 human 221302 ZUP1 zinc finger containing ubiq... NR_154589.1 73.6% (many diffs)
6 human 221302 ZUP1 zinc finger containing ubiq... NM_001361190.1 70.9% 70.9% 0_1ins504
7 human 221302 ZUP1 zinc finger containing ubiq... NR_154587.1 70.9% 1_260del;1410_1411ins166;1829_2045del
8 human 221302 ZUP1 zinc finger containing ubiq... NM_001361191.1 66% 66% 0_1ins588
9 mouse 72580 Zufsp zinc finger with UFM1-speci... XM_006512867.3 86.4% 82.5% (many diffs)
10 mouse 72580 Zufsp zinc finger with UFM1-speci... XM_006512868.3 86.4% 82.5% (many diffs)
11 mouse 72580 Zufsp zinc finger with UFM1-speci... XM_006512869.3 86.4% 82.5% (many diffs)
12 mouse 72580 Zufsp zinc finger with UFM1-speci... XM_006512870.3 86.4% 82.5% (many diffs)
13 mouse 72580 Zufsp zinc finger with UFM1-speci... NM_028287.2 84.5% 80.1% (many diffs)
14 mouse 72580 Zufsp zinc finger with UFM1-speci... XM_011243208.2 59.1% 58.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1800
ORF length:
1734
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT TTCCTGTAAT ATTTGTGGTG AAACAGTAAC CTCAGAACCA GACATGAAAG
121CTCACCTAAT TGTTCACATG GAAAGTGAAA TTATATGTCC ATTTTGCAAG TTGTCAGGTG
181TGAATTATGA TGAAATGTGT TTTCATATCG AAACAGCTCA TTTTGAGCAG AATACACTTG
241AAAGAAACTT TGAGAGGATA AATACAGTAC AATATGGAAC TTCAGATAAC AAGAAAGACA
301ACACCCTACA GTGTGGAATG GAAGTTAATT CAAGTATTCT TTCAGGTTGT GCATCTAATC
361ATCCAAAAAA TTCAGCTCAA AACCTGACTA AAGATAGTAC TTTAAAACAT GAAGGCTTCT
421ATTCAGAGAA CTTAACTGAA TCTAGAAAAT TCCTGAAAAG TAGGGAAAAA CAGTCCAGCC
481TGACCGAAAT AAAAGGATCT GTTTATGAAA CAACATACAG TCCTCCTGAA TGTCCATTCT
541GTGGAAAAAT AGAGGAGCAC AGTGAAGATA TGGAAACTCA TGTGAAAACA AAGCATGCCA
601ATCTTTTAGA CATTCCATTG GAAGACTGTG ATCAACCACT CTATGATTGT CCTATGTGTG
661GGCTCATATG TACAAATTAC CATATTCTTC AGGAACATGT TGACTTGCAT TTGGAAGAAA
721ACAGCTTTCA GCAAGGCATG GATAGAGTCC AGTGTTCTGG TGATCTACAA TTGGCTCACC
781AGCTTCAGCA AGAAGAAGAC AGAAAGAGGA GATCTGAAGA ATCAAGACAA GAAATAGAAG
841AATTTCAGAA GCTGCAGAGA CAATATGGTT TAGATAATTC TGGAGGATAC AAACAACAAC
901AACTACGAAA TATGGAGATA GAAGTAAATA GGGGAAGAAT GCCTCCATCT GAATTTCATA
961GGAGAAAAGC TGATATGATG GAATCATTAG CTCTTGGTTT TGACGATGGA AAAACAAAAA
1021CTTCCGGAAT TATTGAAGCA CTTCATAGGT ATTATCAGAA TGCTGCCACA GATGTGAGAC
1081GGGTGTGGCT TTCTTCAGTG GTGGATCACT TTCATTCATC TTTAGGCGAC AAAGGTTGGG
1141GTTGTGGTTA CAGAAATTTC CAAATGCTAC TTTCATCATT ATTACAAAAT GATGCTTACA
1201ACGATTGCTT AAAAGGTATG TTGATTCCTT GCATTCCAAA AATTCAATCT ATGATTGAAG
1261ATGCATGGAA GGAAGGTTTT GATCCTCAGG GGGCCTCTCA ACTTAATAAC AGGTTACAGG
1321GAACAAAGGC CTGGATTGGA GCATGTGAAG TATATATACT CCTGACCTCC CTAAGGGTAA
1381AGTGTCATAT TGTTGATTTT CACAAATCAA CTGGTCCTTT GGGTACACAC CCTCGCTTAT
1441TTGAATGGAT ATTGAACTAT TATTCTTCAG AGGGAGAAGG GAGTCCAAAG GTAGTGTGTA
1501CATCTAAACC TCCTATCTAT CTTCAGCATC AAGGTCACAG TCGAACTGTT ATTGGAATTG
1561AAGAGAAAAA AAACCGAACA TTATGCTTAC TAATACTTGA TCCTGGATGT CCTTCTCGAG
1621AAATGCAGAA ATTATTAAAG CAAGACATAG AGGCTAGCAG TCTCAAGCAA CTTCGGAAAT
1681CTATGGGAAA TTTAAAACAT AAGCAATACC AGATATTGGC AGTAGAGGGT GCTCTTTCTC
1741TAGAGGAGAA ACTTGCCAGG AGACAAGCTT CTCAAGTCTT TACAGCCGAG AAGATTCCTT
1801GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
1861acgaac

Download FASTA (ORF) (Full)

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