Construct: ORF ccsbBroadEn_05254
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017692.1_s300c1, BRDN0000393715
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZUP1 (221302)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 221302 | ZUP1 | zinc finger containing ubiq... | NM_001361189.1 | 100% | 100% | |
| 2 | human | 221302 | ZUP1 | zinc finger containing ubiq... | NM_145062.3 | 100% | 100% | |
| 3 | human | 221302 | ZUP1 | zinc finger containing ubiq... | NR_154588.1 | 78.1% | 1_260del;1571_1572insGTAAA;1990_2206del | |
| 4 | human | 221302 | ZUP1 | zinc finger containing ubiq... | NR_154586.1 | 74% | 1_260del;1408_1409ins97;1898_2114del | |
| 5 | human | 221302 | ZUP1 | zinc finger containing ubiq... | NR_154589.1 | 73.6% | (many diffs) | |
| 6 | human | 221302 | ZUP1 | zinc finger containing ubiq... | NM_001361190.1 | 70.9% | 70.9% | 0_1ins504 |
| 7 | human | 221302 | ZUP1 | zinc finger containing ubiq... | NR_154587.1 | 70.9% | 1_260del;1410_1411ins166;1829_2045del | |
| 8 | human | 221302 | ZUP1 | zinc finger containing ubiq... | NM_001361191.1 | 66% | 66% | 0_1ins588 |
| 9 | mouse | 72580 | Zufsp | zinc finger with UFM1-speci... | XM_006512867.3 | 86.4% | 82.5% | (many diffs) |
| 10 | mouse | 72580 | Zufsp | zinc finger with UFM1-speci... | XM_006512868.3 | 86.4% | 82.5% | (many diffs) |
| 11 | mouse | 72580 | Zufsp | zinc finger with UFM1-speci... | XM_006512869.3 | 86.4% | 82.5% | (many diffs) |
| 12 | mouse | 72580 | Zufsp | zinc finger with UFM1-speci... | XM_006512870.3 | 86.4% | 82.5% | (many diffs) |
| 13 | mouse | 72580 | Zufsp | zinc finger with UFM1-speci... | NM_028287.2 | 84.5% | 80.1% | (many diffs) |
| 14 | mouse | 72580 | Zufsp | zinc finger with UFM1-speci... | XM_011243208.2 | 59.1% | 58.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1800
- ORF length:
- 1734
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT TTCCTGTAAT ATTTGTGGTG AAACAGTAAC CTCAGAACCA GACATGAAAG 121 CTCACCTAAT TGTTCACATG GAAAGTGAAA TTATATGTCC ATTTTGCAAG TTGTCAGGTG 181 TGAATTATGA TGAAATGTGT TTTCATATCG AAACAGCTCA TTTTGAGCAG AATACACTTG 241 AAAGAAACTT TGAGAGGATA AATACAGTAC AATATGGAAC TTCAGATAAC AAGAAAGACA 301 ACACCCTACA GTGTGGAATG GAAGTTAATT CAAGTATTCT TTCAGGTTGT GCATCTAATC 361 ATCCAAAAAA TTCAGCTCAA AACCTGACTA AAGATAGTAC TTTAAAACAT GAAGGCTTCT 421 ATTCAGAGAA CTTAACTGAA TCTAGAAAAT TCCTGAAAAG TAGGGAAAAA CAGTCCAGCC 481 TGACCGAAAT AAAAGGATCT GTTTATGAAA CAACATACAG TCCTCCTGAA TGTCCATTCT 541 GTGGAAAAAT AGAGGAGCAC AGTGAAGATA TGGAAACTCA TGTGAAAACA AAGCATGCCA 601 ATCTTTTAGA CATTCCATTG GAAGACTGTG ATCAACCACT CTATGATTGT CCTATGTGTG 661 GGCTCATATG TACAAATTAC CATATTCTTC AGGAACATGT TGACTTGCAT TTGGAAGAAA 721 ACAGCTTTCA GCAAGGCATG GATAGAGTCC AGTGTTCTGG TGATCTACAA TTGGCTCACC 781 AGCTTCAGCA AGAAGAAGAC AGAAAGAGGA GATCTGAAGA ATCAAGACAA GAAATAGAAG 841 AATTTCAGAA GCTGCAGAGA CAATATGGTT TAGATAATTC TGGAGGATAC AAACAACAAC 901 AACTACGAAA TATGGAGATA GAAGTAAATA GGGGAAGAAT GCCTCCATCT GAATTTCATA 961 GGAGAAAAGC TGATATGATG GAATCATTAG CTCTTGGTTT TGACGATGGA AAAACAAAAA 1021 CTTCCGGAAT TATTGAAGCA CTTCATAGGT ATTATCAGAA TGCTGCCACA GATGTGAGAC 1081 GGGTGTGGCT TTCTTCAGTG GTGGATCACT TTCATTCATC TTTAGGCGAC AAAGGTTGGG 1141 GTTGTGGTTA CAGAAATTTC CAAATGCTAC TTTCATCATT ATTACAAAAT GATGCTTACA 1201 ACGATTGCTT AAAAGGTATG TTGATTCCTT GCATTCCAAA AATTCAATCT ATGATTGAAG 1261 ATGCATGGAA GGAAGGTTTT GATCCTCAGG GGGCCTCTCA ACTTAATAAC AGGTTACAGG 1321 GAACAAAGGC CTGGATTGGA GCATGTGAAG TATATATACT CCTGACCTCC CTAAGGGTAA 1381 AGTGTCATAT TGTTGATTTT CACAAATCAA CTGGTCCTTT GGGTACACAC CCTCGCTTAT 1441 TTGAATGGAT ATTGAACTAT TATTCTTCAG AGGGAGAAGG GAGTCCAAAG GTAGTGTGTA 1501 CATCTAAACC TCCTATCTAT CTTCAGCATC AAGGTCACAG TCGAACTGTT ATTGGAATTG 1561 AAGAGAAAAA AAACCGAACA TTATGCTTAC TAATACTTGA TCCTGGATGT CCTTCTCGAG 1621 AAATGCAGAA ATTATTAAAG CAAGACATAG AGGCTAGCAG TCTCAAGCAA CTTCGGAAAT 1681 CTATGGGAAA TTTAAAACAT AAGCAATACC AGATATTGGC AGTAGAGGGT GCTCTTTCTC 1741 TAGAGGAGAA ACTTGCCAGG AGACAAGCTT CTCAAGTCTT TACAGCCGAG AAGATTCCTT 1801 GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 1861 acgaac