Construct: ORF ccsbBroadEn_05376
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015022.1_s300c1, BRDN0000392271
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GDPD1 (284161)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 284161 | GDPD1 | glycerophosphodiester phosp... | NM_001165994.2 | 100% | 100% | |
| 2 | human | 284161 | GDPD1 | glycerophosphodiester phosp... | NM_001165993.2 | 93.7% | 88.4% | (many diffs) |
| 3 | human | 284161 | GDPD1 | glycerophosphodiester phosp... | NM_182569.4 | 90.9% | 85.2% | (many diffs) |
| 4 | human | 284161 | GDPD1 | glycerophosphodiester phosp... | XM_017024521.1 | 57.5% | 50.1% | (many diffs) |
| 5 | human | 284161 | GDPD1 | glycerophosphodiester phosp... | XR_001752500.2 | 35.1% | (many diffs) | |
| 6 | mouse | 66569 | Gdpd1 | glycerophosphodiester phosp... | NM_025638.2 | 79.7% | 81.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 936
- ORF length:
- 870
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC GTCCACTGCG GCTTTTTACC TTCTCTCTAC GCTAGGAGGA TACTTGGTGA 121 CCTCATTCTT GTTGCTTAAA TACCCGACCT TGCTGCACCA GAGAAAGAAG CAGCGATTCC 181 TCAGTAAACA CATCTCTCAC CGCGGAGGTG CTGGAGAAAA TTTGGAGAAT ACAATGGCAG 241 CCTTTCAGCA TGCGGTTAAA ATCGGAACTG ATATGCTAGA ATTGGACTGC CATATCACAA 301 AAGATGAACA AGTTGTAGTG TCACATGATG AGAATCTAAA GAGAGCAACT GGGGTCAATG 361 TAAACATCTC TGATCTCAAA TACTGTGAGC TCCCACCTTA CCTTGGCAAA CTGGATGTCT 421 CATTTCAAAG AGCATGCCAG TGTGAAGGAA AAGATAACCG AATTCCATTA CTGAAGGAAG 481 TTTTTGAGGC CTTTCCTAAC ACTCCCATTA ACATCGATAT CAAAGTCAAC AACAATGTGC 541 TGATTAAGAA GGTTTCAGAG TTGGTGAAGC GGTATAATCG AGAACACTTA ACAGTGTGGG 601 GTAATGCCAA TTATGAAATT GTAGAAAAGT GCTACAAAGA GAATTCAGAT ATTCCTATAC 661 TCTTCAGTCT ACAACGTGTC CTGCTCATTC TTGGCCTTTT CTTCACTGGC CTCTTGCCCT 721 TTGTGCCCAT TCGAGAACAG TTTTTTGAAA TCCCAATGCC TTCTATTATA CTGAAGCTAA 781 AAGAACCACA CACCATGTCC AGAAGTCAAA AGTTTCTCAT CTGGCTTTCT GATCTCTTAC 841 TAATGAGGAA AGCTTTGTTT GACCACCTAA CTGCTCGAGG CATTCAAGTA AGTTTCTGGA 901 ATGATGCATT TTGGAAGCAG CATAGCTCAC CAGTTTACCC AACTTGCTTG TACAAAGTtg 961 gcattataag aaagcattgc ttatcaattt gttgcaacga ac