Construct: ORF ccsbBroadEn_05395

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013302.1_s300c1, BRDN0000398288
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TCAIM (285343)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 285343 TCAIM T cell activation inhibitor... NM_001282913.2 100% 100%
2 human 285343 TCAIM T cell activation inhibitor... NM_173826.4 100% 100%
3 human 285343 TCAIM T cell activation inhibitor... NM_001282914.2 70.9% 70.9% 0_1ins432
4 human 285343 TCAIM T cell activation inhibitor... NM_001282915.2 70.9% 70.9% 0_1ins432
5 human 285343 TCAIM T cell activation inhibitor... XR_001740117.2 30.2% (many diffs)
6 human 285343 TCAIM T cell activation inhibitor... XR_001740118.2 27.4% (many diffs)
7 human 285343 TCAIM T cell activation inhibitor... NM_001029839.2 13.3% 12% (many diffs)
8 human 285343 TCAIM T cell activation inhibitor... NM_001029840.2 13.3% 12% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1557
ORF length:
1488
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTTTTGCCAC CTGAGACCTA TGAGGAGGTT ATGTCTAGAG AAGATATTTC
121CACACTGGTT TCCCTTTTCA AGAGCTTTAT CGGGAGCTGA AGCAGTCAAT GCCTTGAGGC
181CTTTCTATTT TGCAGTACAT CCAGATTTCT TTGGACAGCA CCCCGTAGAA AGGGAAATCA
241ATGAAAATTC TCTTAAAAGG TTAAGTGTCT ACCTAGAAAA CCTCCAGAAA CCAGGCTTCA
301AGTCTTTGAA ACCAACTCAG CTTACATTTT ATGTAAGAGA AACAGACCAG AGTTCCTCCG
361ATGGCCAGGA ACCTTTTAGT ACTTCCGGAT TTCGAGCAGT CAAATTTACT TTGCACACCA
421GAGATCTGCT AAGCACAGTG TTATATATTC TCAACTCCTG CAGTTTATCT GTTGAACATA
481TCCAAAGCTT GAATACTAAT ATGCATACCC AGCCTCTCAA AGAAGCTAAA AGGATGCCTG
541ACAGGCCCAT CAAATGGGAC AAGTCTTATT ACTCCTTTAC TGGATTCAAG GACCCTGATG
601AAGACCTTGA ACAAGTCTCG AGAGTGGAAA CAACTCTCAC ATCCTGGTTA GATAACAATG
661GGAAAAGTGC TGTTAAAAAG CTAAAGAACA GTTTGCCACT TAGAAAAGAA CTAGATCGTT
721TAAAAGATGA ACTGTCTCAT CAATTGCAAC TCTCAGATAT CAGGTGGCAG AGGAGCTGGG
781GCATCGCCCA CCGCTGTAGC CAGCTGCATA GTTTAAGCCG CTTAGCACAG CAGAATTTGG
841AAACACTTAA AAAAGCAAAA GGGTGTACAA TCATATTTAC AGACCGTTCT GGCATGAGTG
901CAGTGGGCCA TGTGATGCTA GGAACAATGG ATGTCCATCA CCACTGGACA AAACTTTTTG
961AAAGATTGCC AAGTTATTTT GACCTTCAGA GGAGGCTGAT GATTTTAGAA GACCAAATAA
1021GCTATCTTTT AGGTGGCATA CAAGTTGTTT ATATTGAAGA ATTACAGCCA GTATTGACAC
1081TTGAAGAATA TTACTCTCTT CTTGATGTGT TTTATAATAG ACTGTTGAAA AGTAGAATAC
1141TATTTCACCC TCGAAGTTTG CGTGGTTTAC AAATGATCCT TAACAGTGAC AGATATGCTC
1201CAAGCTTGCA TGAACTCGGG CATTTTAATA TTCCAACACT CTGTGATCCA GCAAATCTCC
1261AGTGGTTTAT TCTCACCAAA GCTCAGCAGG CAAGAGAGAA CATGAAAAGA AAGGAAGAGT
1321TAAAGGTTAT TGAAAATGAA TTGATACAGG CATCAACAAA GAAATTTTCT TTGGAGAAGT
1381TATATAAAGA GCCCAGCATT TCTAGTATAC AAATGGTGGA TTGTTGTAAG AGACTTCTAG
1441AACAATCACT GCCTTACCTA CATGGGATGC ACCTCTGCAT TTCACATTTT TACTCTGTTA
1501TGCAAGATGG AGACCTTTGT ATTCCTTGGA ATTGGAAGAA TGGAGAAGCC ATTAAGTTGC
1561CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
1621aac

Download FASTA (ORF) (Full)

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