Transcript: Human NM_001282915.2

Homo sapiens T cell activation inhibitor, mitochondrial (TCAIM), transcript variant 6, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
TCAIM (285343)
Length:
3416
CDS:
592..1650

Additional Resources:

NCBI RefSeq record:
NM_001282915.2
NBCI Gene record:
TCAIM (285343)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001282915.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000230758 AGATACCTTCGGGCAATATTT pLKO_005 2886 3UTR 100% 15.000 21.000 N TCAIM n/a
2 TRCN0000230756 TGTAGCCAGCTGCATAGTTTA pLKO_005 886 CDS 100% 13.200 18.480 N TCAIM n/a
3 TRCN0000230757 CCTCGAAGTTTGCGTGGTTTA pLKO_005 1240 CDS 100% 10.800 15.120 N TCAIM n/a
4 TRCN0000166925 CCAGCATTTCTAGTATACAAA pLKO.1 1484 CDS 100% 5.625 7.875 N TCAIM n/a
5 TRCN0000167932 CGTGCCTAACAACTGTACTTA pLKO.1 3178 3UTR 100% 5.625 7.875 N TCAIM n/a
6 TRCN0000218678 GCAAATCTCCAGTGGTTTATT pLKO_005 1342 CDS 100% 15.000 10.500 N TCAIM n/a
7 TRCN0000167432 GCAGTCTGATAACCAGTTTAT pLKO.1 2427 3UTR 100% 13.200 9.240 N TCAIM n/a
8 TRCN0000218788 TCTCACATCCTGGTTAGATAA pLKO_005 726 CDS 100% 13.200 9.240 N TCAIM n/a
9 TRCN0000172718 GCCATGTGATGCTAGGAACAA pLKO.1 998 CDS 100% 4.950 3.465 N TCAIM n/a
10 TRCN0000168434 GCAGCCAGTAATTGACAGTTA pLKO.1 2291 3UTR 100% 4.950 2.970 N TCAIM n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001282915.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05395 pDONR223 100% 70.9% 70.9% None 0_1ins432 n/a
2 ccsbBroad304_05395 pLX_304 0% 70.9% 70.9% V5 0_1ins432 n/a
3 TRCN0000481354 ACCCGTTTCTTCACCTAGCTGTCC pLX_317 35.1% 70.9% 70.9% V5 0_1ins432 n/a
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