Construct: ORF ccsbBroadEn_05397

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009442.1_s300c1, BRDN0000455674
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TPRG1 (285386)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 285386 TPRG1 tumor protein p63 regulated 1 NM_198485.4 100% 100%
2 human 285386 TPRG1 tumor protein p63 regulated 1 XM_017006261.2 100% 100%
3 human 285386 TPRG1 tumor protein p63 regulated 1 XM_024453483.1 100% 100%
4 human 285386 TPRG1 tumor protein p63 regulated 1 XM_005247382.5 97.1% 97.1% 1_24del
5 human 285386 TPRG1 tumor protein p63 regulated 1 XM_011512732.2 93.2% 93.2% 300_359del
6 human 285386 TPRG1 tumor protein p63 regulated 1 XM_017006257.1 93.2% 93.2% 300_359del
7 human 285386 TPRG1 tumor protein p63 regulated 1 XM_017006258.1 93.2% 93.2% 300_359del
8 human 285386 TPRG1 tumor protein p63 regulated 1 XM_017006259.1 93.2% 93.2% 300_359del
9 human 285386 TPRG1 tumor protein p63 regulated 1 XM_017006260.1 93.2% 93.2% 300_359del
10 human 285386 TPRG1 tumor protein p63 regulated 1 XM_024453473.1 93.2% 93.2% 300_359del
11 human 285386 TPRG1 tumor protein p63 regulated 1 XM_024453474.1 93.2% 93.2% 300_359del
12 human 285386 TPRG1 tumor protein p63 regulated 1 XM_024453475.1 93.2% 93.2% 300_359del
13 human 285386 TPRG1 tumor protein p63 regulated 1 XM_024453476.1 93.2% 93.2% 300_359del
14 human 285386 TPRG1 tumor protein p63 regulated 1 XM_024453477.1 93.2% 93.2% 300_359del
15 human 285386 TPRG1 tumor protein p63 regulated 1 XM_024453478.1 93.2% 93.2% 300_359del
16 human 285386 TPRG1 tumor protein p63 regulated 1 XM_024453479.1 93.2% 93.2% 300_359del
17 human 285386 TPRG1 tumor protein p63 regulated 1 XM_024453480.1 93.2% 93.2% 300_359del
18 human 285386 TPRG1 tumor protein p63 regulated 1 XM_024453481.1 93.2% 93.2% 300_359del
19 human 285386 TPRG1 tumor protein p63 regulated 1 XM_024453482.1 93.2% 93.2% 300_359del
20 human 285386 TPRG1 tumor protein p63 regulated 1 XM_011512734.3 78% 75.2% (many diffs)
21 human 285386 TPRG1 tumor protein p63 regulated 1 XM_011512735.3 76.3% 76.3% 1_24del;324_325ins177
22 human 285386 TPRG1 tumor protein p63 regulated 1 XM_017006262.1 67.1% 65% (many diffs)
23 human 285386 TPRG1 tumor protein p63 regulated 1 XM_017006263.1 67.1% 65% (many diffs)
24 human 285386 TPRG1 tumor protein p63 regulated 1 XM_011512736.3 45.1% 35.1% (many diffs)
25 human 285386 TPRG1 tumor protein p63 regulated 1 XM_005247388.4 42.6% 38% (many diffs)
26 mouse 71338 Tprg transformation related prot... NM_175165.3 84% 81.3% (many diffs)
27 mouse 71338 Tprg transformation related prot... XM_006522581.2 84% 81.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
894
ORF length:
825
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCAACAATT GGGAGTTTTG AAGGATTCCA GGCTGTGTCT CTGAAGCAAG
121AGGGAGATGA CCAACCCTCT GAGACTGACC ACCTATCGAT GGAGGAAGAG GACCCGATGC
181CAAGACAGAT TTCAAGGCAG TCAAGTGTGA CCGAATCAAC TCTTTACCCC AATCCTTATC
241ATCAGCCTTA TATCTCACGG AAGTACTTTG CTACACGGCC GGGGGCCATT GAGACTGCCA
301TGGAAGACTT GAAAGGTCAC GTAGCTGAGA CTTCTGGAGA GACCATTCAA GGCTTCTGGC
361TCTTGACAAA GATAGACCAC TGGAACAATG AGAAGGAGAG AATTCTACTG GTCACAGACA
421AGACTCTCTT GATCTGCAAA TACGACTTCA TCATGCTGAG TTGTGTGCAG CTGCAGCGGA
481TTCCTCTGAG CGCTGTCTAT CGCATCTGCC TGGGCAAGTT CACCTTCCCT GGGATGTCCC
541TGGACAAGAG ACAAGGAGAA GGCCTTAGGA TCTACTGGGG GAGTCCGGAG GAGCAGTCTC
601TTCTGTCCCG CTGGAACCCA TGGTCCACTG AAGTTCCTTA TGCTACTTTC ACTGAGCATC
661CTATGAAATA CACCAGTGAG AAATTCCTTG AAATTTGCAA GTTGTCTGGG TTCATGTCTA
721AGCTTGTTCC AGCTATCCAG AATGCCCACA AGAATTCAAC TGGATCTGGA AGAGGAAAGA
781AACTGATGGT GTTAACTGAA CCCATTTTGA TTGAGACCTA CACAGGGCTG ATGTCATTCA
841TTGGAAACCG CAACAAACTT GGCTATTCCC TTGCCCGTGG GAGTATTGGT TTTTTGCCAA
901CTTTCTTGTA CAAAAGTTGG cattataaga aagcattgct tatcaatttg ttgcaacgaa
961c

Download FASTA (ORF) (Full)