Construct: ORF ccsbBroadEn_05398
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003010.1_s300c1, BRDN0000387960
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RNF212 (285498)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 285498 | RNF212 | ring finger protein 212 | NM_001131034.4 | 100% | 100% | |
| 2 | human | 285498 | RNF212 | ring finger protein 212 | XM_011513439.1 | 83.8% | 81.1% | (many diffs) |
| 3 | human | 285498 | RNF212 | ring finger protein 212 | XM_017008039.1 | 83.8% | 81.1% | (many diffs) |
| 4 | human | 285498 | RNF212 | ring finger protein 212 | XM_017008040.1 | 83.8% | 81.1% | (many diffs) |
| 5 | human | 285498 | RNF212 | ring finger protein 212 | NM_194439.4 | 78.1% | 65.9% | 573_574ins53;696_697ins142 |
| 6 | human | 285498 | RNF212 | ring finger protein 212 | XM_011513443.1 | 77.7% | 77.7% | 0_1ins198 |
| 7 | human | 285498 | RNF212 | ring finger protein 212 | NM_001366919.1 | 77% | 66.3% | (many diffs) |
| 8 | human | 285498 | RNF212 | ring finger protein 212 | XR_001741208.1 | 74.3% | (many diffs) | |
| 9 | human | 285498 | RNF212 | ring finger protein 212 | XM_011513445.2 | 70.3% | 70.3% | 246_247ins264 |
| 10 | human | 285498 | RNF212 | ring finger protein 212 | NM_001366918.1 | 70.1% | 62.1% | (many diffs) |
| 11 | human | 285498 | RNF212 | ring finger protein 212 | XR_002959724.1 | 67.2% | (many diffs) | |
| 12 | human | 285498 | RNF212 | ring finger protein 212 | XR_924933.1 | 61.1% | (many diffs) | |
| 13 | human | 285498 | RNF212 | ring finger protein 212 | XR_924936.1 | 57% | (many diffs) | |
| 14 | human | 285498 | RNF212 | ring finger protein 212 | XR_924937.1 | 56.5% | (many diffs) | |
| 15 | human | 285498 | RNF212 | ring finger protein 212 | XM_011513446.1 | 48.9% | 38.9% | (many diffs) |
| 16 | human | 285498 | RNF212 | ring finger protein 212 | XM_017008041.1 | 45.8% | 31.8% | (many diffs) |
| 17 | human | 285498 | RNF212 | ring finger protein 212 | NR_159498.1 | 33% | (many diffs) | |
| 18 | human | 285498 | RNF212 | ring finger protein 212 | NR_159502.1 | 31% | 1_100del;462_463ins148;844_2242del | |
| 19 | human | 285498 | RNF212 | ring finger protein 212 | NR_159505.1 | 30.5% | (many diffs) | |
| 20 | human | 285498 | RNF212 | ring finger protein 212 | NR_159503.1 | 30.4% | (many diffs) | |
| 21 | human | 285498 | RNF212 | ring finger protein 212 | NR_159497.1 | 28.8% | (many diffs) | |
| 22 | human | 285498 | RNF212 | ring finger protein 212 | NR_159501.1 | 26.5% | (many diffs) | |
| 23 | human | 285498 | RNF212 | ring finger protein 212 | NR_159504.1 | 26.2% | (many diffs) | |
| 24 | human | 285498 | RNF212 | ring finger protein 212 | NR_159500.1 | 21.8% | (many diffs) | |
| 25 | human | 285498 | RNF212 | ring finger protein 212 | NR_159499.1 | 21.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 960
- ORF length:
- 891
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAGAAAG 61 TTGGCACCAT GGCCAACTGG GTGTTCTGTA ATCGCTGCTT CCAGCCGCCC CACAGGACGT 121 CGTGCTTCAG CCTCACCAAC TGCGGGCACG TGTACTGCGA CGCCTGCCTC GGCAAAGGTA 181 AAAAGAATGA ATGCTTGATT TGTAAAGCTC CTTGTCGTAC AGTTTTGCTT TCAAAGCATA 241 CCGACGCAGA TATCCAGGCA TTCTTCATGA GCATAGACAG TCTGTGTAAG AAGTACTCCA 301 GGGAAACCTC CCAGATTTTA GAATTTCAAG AAAAACACAG GAAGAGATTG TTAGCCTTCT 361 ATAGAGAAAA GATTTCTAGG TTGGAAGAAT CCCTTAGGAA GTCAGTGCTG CAGATAGAAC 421 AACTACAAAG TATGAGATCA TCACAACAAA CAGCTTTCAG CACAATAAAA AGTTCAGTTT 481 CAACAAAACC ACACGGATGC CTGCTGCCAC CTCACTCATC AGCCCCCGAC AGACTGGAGT 541 CGATGGAAGT TGATCTCTCT CCTTCTCCGA TTAGAAAATC TGAGATAGCA GCCGGCCCTG 601 CGAGAATCTC CATGATTAGT CCACCTCAAG ATGGACGAAT GGGGCCACAT CTAACAGCTT 661 CTTTCTGTTT CATCCCATGG TTGACCTTGT CTAAGCCCCC TGTGCCCGGA GAGTGTGTCA 721 TTTCCAGAGG TTCACCATGT TTCTGCATAG ACGTCTGTCC TCACTGGCTG CTCCTCCTAG 781 CGTTCAGTTC TGGAAGGCAC GGGGAACTCA CCAACTCTAA AACACTTCCA ATATATGCTG 841 AGGTACAAAG GGCCGTCTTG TTTCCGTTCC AGCAGGCTGA GGGCACCCTG GACACGTTCA 901 GAACACCCGC TGTGTCTGTT GTGTTTCCTC TTTGCCAATT TGAAAGGAAA AAGTCATTTT 961 TGCCAACTTT TTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 1021 acgaac