Construct: ORF ccsbBroadEn_05461
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010061.1_s300c1, BRDN0000457111
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BRINP3 (339479)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 339479 | BRINP3 | BMP/retinoic acid inducible... | NM_199051.3 | 100% | 100% | |
| 2 | human | 339479 | BRINP3 | BMP/retinoic acid inducible... | XM_017001125.1 | 100% | 100% | |
| 3 | human | 339479 | BRINP3 | BMP/retinoic acid inducible... | XM_017001126.1 | 100% | 100% | |
| 4 | human | 339479 | BRINP3 | BMP/retinoic acid inducible... | XM_011509472.2 | 93.9% | 90.2% | 0_1ins115;121_145del |
| 5 | human | 339479 | BRINP3 | BMP/retinoic acid inducible... | XM_017001127.1 | 93.9% | 90.2% | 0_1ins115;121_145del |
| 6 | human | 339479 | BRINP3 | BMP/retinoic acid inducible... | XM_017001128.1 | 93.9% | 90.2% | 0_1ins115;121_145del |
| 7 | human | 339479 | BRINP3 | BMP/retinoic acid inducible... | XM_011509475.2 | 92.6% | 87.7% | (many diffs) |
| 8 | human | 339479 | BRINP3 | BMP/retinoic acid inducible... | NM_001317188.1 | 86.6% | 82.5% | 0_1ins115;119_120ins191 |
| 9 | human | 339479 | BRINP3 | BMP/retinoic acid inducible... | XM_011509476.2 | 86.6% | 82.5% | 0_1ins115;119_120ins191 |
| 10 | human | 339479 | BRINP3 | BMP/retinoic acid inducible... | XM_017001129.1 | 86.6% | 82.5% | 0_1ins115;119_120ins191 |
| 11 | human | 339479 | BRINP3 | BMP/retinoic acid inducible... | XM_017001130.1 | 86.6% | 82.5% | 0_1ins115;119_120ins191 |
| 12 | human | 339479 | BRINP3 | BMP/retinoic acid inducible... | XM_017001131.1 | 61.7% | 61.7% | 0_1ins879 |
| 13 | human | 339479 | BRINP3 | BMP/retinoic acid inducible... | XM_017001133.1 | 51.5% | 51.5% | 1185_1185delGins1114 |
| 14 | human | 339479 | BRINP3 | BMP/retinoic acid inducible... | XM_017001132.1 | 51.5% | 51.4% | 1185_1185delCins1114 |
| 15 | mouse | 215378 | Brinp3 | bone morphogenetic protein/... | NM_001145807.1 | 91.1% | 97.7% | (many diffs) |
| 16 | mouse | 215378 | Brinp3 | bone morphogenetic protein/... | NM_153539.3 | 91.1% | 97.7% | (many diffs) |
| 17 | mouse | 215378 | Brinp3 | bone morphogenetic protein/... | XM_006529367.3 | 91.1% | 97.7% | (many diffs) |
| 18 | mouse | 215378 | Brinp3 | bone morphogenetic protein/... | XM_006529368.3 | 91.1% | 97.7% | (many diffs) |
| 19 | mouse | 215378 | Brinp3 | bone morphogenetic protein/... | XM_017319792.1 | 91.1% | 97.7% | (many diffs) |
| 20 | mouse | 215378 | Brinp3 | bone morphogenetic protein/... | XM_011247972.2 | 55.7% | 60.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2367
- ORF length:
- 2298
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GATATGGCGA AGCAGAGCTG GTGCTGAATT GTTCTCTCTG ATGGCTCTAT 121 GGGAGTGGAT AGCACTGAGT CTTCATTGCT GGGTTTTAGC GGTTGCTGCT GTTTCGGATC 181 AGCATGCCAC AAGCCCCTTC GACTGGCTCC TCTCTGATAA GGGACCCTTC CATCGCTCAC 241 AGGAATACAC AGATTTTGTG GACAGAAGCC GGCAGGGATT TAGCACAAGA TACAAGATAT 301 ACAGGGAGTT TGGCCGCTGG AAAGTAAATA ACCTTGCAGT TGAGAGAAGA AATTTCCTTG 361 GCTCTCCTCT GCCTCTTGCC CCTGAATTCT TCCGCAACAT AAGACTTTTG GGACGTCGAC 421 CTACCCTTCA GCAAATCACA GAAAACCTTA TCAAGAAATA TGGGACACAT TTCTTGCTAT 481 CTGCTACTCT GGGAGGAGAG GAGTCACTCA CAATTTTTGT GGACAAGCGG AAGTTGAGCA 541 AACGAGCTGA AGGAAGTGAT TCCACCACCA ATAGCTCTTC GGTCACTCTG GAGACGCTAC 601 ATCAGCTAGC CGCTTCTTAT TTCATTGACA GGGACAGCAC CCTTCGGAGA CTTCACCACA 661 TTCAAATTGC ATCCACTGCC ATAAAGGTAA CAGAAACACG GACTGGTCCT CTTGGCTGCA 721 GTAACTATGA CAACCTAGAT TCTGTCAGTT CTGTTCTGGT TCAGAGTCCT GAGAATAAGA 781 TTCAGTTGCA AGGGCTTCAA GTACTTCTCC CAGACTATCT TCAGGAACGT TTTGTACAAG 841 CAGCTTTGAG CTACATTGCT TGCAATTCAG AGGGAGAGTT TATCTGCAAG GAAAATGACT 901 GCTGGTGTCA CTGTGGTCCC AAATTTCCAG AATGCAACTG CCCCTCCATG GACATTCAAG 961 CCATGGAAGA GAATCTTCTT CGAATAACTG AAACCTGGAA AGCTTACAAC AGTGACTTTG 1021 AGGAATCAGA TGAATTCAAG TTATTTATGA AAAGGCTACC TATGAATTAT TTCCTCAACA 1081 CATCTACTAT AATGCATTTG TGGACAATGG ATTCTAATTT TCAGCGCCGT TATGAACAAC 1141 TGGAGAACAG CATGAAACAA CTTTTCCTAA AGGCGCAGAA AATTGTACAC AAGCTTTTTA 1201 GCCTTAGCAA GAGGTGTCAT AAACAACCCC TCATCAGCCT GCCAAGACAA AGAACCTCAA 1261 CCTACTGGCT TACTCGCATC CAGTCTTTTC TCTACTGCAA TGAGAACGGC CTCCTAGGCA 1321 GCTTTTCAGA AGAGACGCAC TCGTGCACGT GTCCGAATGA CCAGGTGGTC TGCACCGCGT 1381 TCCTGCCCTG CACAGTGGGA GACGCCTCTG CCTGCCTGAC ATGCGCACCA GACAACCGCA 1441 CCCGCTGCGG CACCTGCAAC ACCGGCTACA TGCTCAGCCA GGGGCTCTGC AAGCCTGAAG 1501 TCGCCGAGTC CACCGATCAC TATATTGGCT TTGAAACTGA CCTGCAAGAT CTCGAGATGA 1561 AATATCTGCT GCAGAAAACG GACAGACGAA TAGAAGTCCA TGCCATTTTT ATCAGCAATG 1621 ACATGCGCCT CAATAGCTGG TTTGATCCCT CCTGGCGTAA GCGGATGCTC CTCACCTTGA 1681 AGAGCAATAA GTACAAGTCA AGTCTGGTCC ATATGATTTT GGGTCTCTCT TTACAGATTT 1741 GCTTAACTAA AAACAGCACC TTGGAGCCAG TGTTGGCTGT TTATGTCAAT CCCTTCGGAG 1801 GCAGCCACTC TGAGAGCTGG TTTATGCCTG TGAATGAAAA CAGCTTTCCA GACTGGGAGC 1861 GGACTAAGTT GGACCTACCC CTGCAGTGTT ATAACTGGAC ATTAACTCTG GGGAACAAAT 1921 GGAAGACATT TTTTGAGACA GTACACATCT ACCTGAGAAG TCGCATCAAG TCCAATGGTC 1981 CCAATGGTAA TGAGAGCATT TACTATGAAC CTCTGGAGTT TATTGACCCT TCCCGGAACC 2041 TGGGCTATAT GAAAATCAAT AACATTCAAG TGTTTGGCTA CAGCATGCAC TTTGACCCTG 2101 AAGCAATTCG GGACCTGATT TTGCAGCTGG ACTACCCCTA TACTCAGGGA TCCCAGGATT 2161 CAGCACTTTT GCAACTACTA GAGATCAGAG ACCGTGTAAA TAAACTCTCC CCACCTGGTC 2221 AGCGTCGTCT AGATCTTTTC TCTTGCTTGC TTCGTCATAG ACTCAAGCTG TCTACTAGTG 2281 AGGTGGTGAG GATCCAATCT GCTCTGCAGG CGTTTAATGC CAAATTGCCA AACACAATGG 2341 ATTATGACAC GACCAAATTA TGTAGTTTGC CAACTTTCTT GTACAAAGTT GGcattataa 2401 gaaagcattg cttatcaatt tgttgcaacg aac