Transcript: Human XM_011509476.2

PREDICTED: Homo sapiens BMP/retinoic acid inducible neural specific 3 (BRINP3), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
BRINP3 (339479)
Length:
2960
CDS:
610..2604

Additional Resources:

NCBI RefSeq record:
XM_011509476.2
NBCI Gene record:
BRINP3 (339479)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011509476.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000153811 CCTTAGCAAGAGGTGTCATAA pLKO.1 1437 CDS 100% 13.200 18.480 N BRINP3 n/a
2 TRCN0000152416 CACACATGAACTTGCTGACAA pLKO.1 2746 3UTR 100% 4.950 3.960 N BRINP3 n/a
3 TRCN0000157749 CGGAGACTTCACCACATTCAA pLKO.1 880 CDS 100% 5.625 3.938 N BRINP3 n/a
4 TRCN0000153297 GCAGGGATTTAGCACAAGATA pLKO.1 698 CDS 100% 5.625 3.938 N BRINP3 n/a
5 TRCN0000154095 CCCAATGGTAATGAGAGCATT pLKO.1 2215 CDS 100% 4.950 3.465 N BRINP3 n/a
6 TRCN0000151524 CGAATAACTGAAACCTGGAAA pLKO.1 1216 CDS 100% 4.950 3.465 N BRINP3 n/a
7 TRCN0000157935 CTTCGGAGACTTCACCACATT pLKO.1 877 CDS 100% 4.950 3.465 N BRINP3 n/a
8 TRCN0000156817 GAAGCAATTCGGGACCTGATT pLKO.1 2335 CDS 100% 4.950 3.465 N BRINP3 n/a
9 TRCN0000156973 GAGTGGATAGCACTGAGTCTT pLKO.1 549 5UTR 100% 4.950 3.465 N BRINP3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011509476.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05461 pDONR223 100% 86.6% 82.5% None 0_1ins115;119_120ins191 n/a
2 TRCN0000477767 TTCCTAGCGATTTCTCAATACATG pLX_317 17% 86.6% 82.5% V5 0_1ins115;119_120ins191 n/a
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