Construct: ORF ccsbBroadEn_05581
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002344.1_s300c1, BRDN0000387635
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- YPEL2 (388403)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 388403 | YPEL2 | yippee like 2 | NM_001005404.4 | 100% | 100% | |
| 2 | human | 388403 | YPEL2 | yippee like 2 | XM_017024621.1 | 100% | 100% | |
| 3 | human | 29799 | YPEL1 | yippee like 1 | NM_013313.5 | 80.6% | 96.6% | (many diffs) |
| 4 | mouse | 77864 | Ypel2 | yippee-like 2 (Drosophila) | NM_001005341.3 | 93.5% | 100% | (many diffs) |
| 5 | mouse | 106369 | Ypel1 | yippee like 1 | NM_023249.6 | 81.5% | 96.6% | (many diffs) |
| 6 | mouse | 106369 | Ypel1 | yippee like 1 | XM_030248914.1 | 81.5% | 96.6% | (many diffs) |
| 7 | mouse | 66090 | Ypel3 | yippee-like 3 (Drosophila) | NM_025347.2 | 79.6% | 89% | (many diffs) |
| 8 | mouse | 66090 | Ypel3 | yippee-like 3 (Drosophila) | NM_026875.2 | 79.6% | 89% | (many diffs) |
| 9 | mouse | 106369 | Ypel1 | yippee like 1 | NM_001291053.1 | 60.7% | 65.5% | (many diffs) |
| 10 | mouse | 106369 | Ypel1 | yippee like 1 | NM_001291047.1 | 50% | 59.2% | (many diffs) |
| 11 | mouse | 106369 | Ypel1 | yippee like 1 | XM_006521676.4 | 47.1% | 55.8% | (many diffs) |
| 12 | mouse | 77864 | Ypel2 | yippee-like 2 (Drosophila) | XM_011249316.2 | 18.2% | 12% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 426
- ORF length:
- 357
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGTGAAGATG ACAAGATCGA AGACTTTCCA GGCATATCTG CCCTCCTGCC 121 ACCGGACCTA CAGCTGCATT CACTGCAGAG CTCACTTGGC CAATCATGAT GAACTAATTT 181 CCAAGTCATT CCAAGGAAGT CAAGGACGAG CATACCTCTT TAACTCAGTA GTTAATGTGG 241 GCTGTGGGCC TGCAGAAGAG CGAGTGTTGC TAACAGGACT GCATGCAGTC GCAGACATTT 301 ACTGTGAAAA CTGCAAAACC ACTCTGGGCT GGAAATACGA ACATGCTTTT GAAAGCAGCC 361 AGAAATATAA AGAAGGCAAA TACATCATTG AACTAGCACA CATGATCAAG GACAATGGCT 421 GGGACTTGCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 481 gttgcaacga ac