Construct: ORF ccsbBroadEn_05861

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012372.1_s300c1, BRDN0000389158
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ASS1 (445)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 445 ASS1 argininosuccinate synthase 1 NM_000050.4 99.9% 100% 876T>C
2 human 445 ASS1 argininosuccinate synthase 1 NM_054012.4 99.9% 100% 876T>C
3 human 445 ASS1 argininosuccinate synthase 1 XM_005272200.3 99.9% 100% 876T>C
4 human 445 ASS1 argininosuccinate synthase 1 XM_017014729.1 92.7% 92.7% 1_96del;972T>C
5 human 445 ASS1 argininosuccinate synthase 1 XM_011518705.2 91.4% 91.5% 1_114del;990T>C
6 mouse 11898 Ass1 argininosuccinate synthetase 1 NM_007494.3 89.1% 96.8% (many diffs)
7 mouse 432466 Gm5424 predicted gene 5424; argini... NR_002687.1 71.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1302
ORF length:
1236
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC CAGCAAAGGC TCCGTGGTTC TGGCCTACAG TGGCGGCCTG GACACCTCGT
121GCATCCTCGT GTGGCTGAAG GAACAAGGCT ATGACGTCAT TGCCTATCTG GCCAACATTG
181GCCAGAAGGA AGACTTCGAG GAAGCCAGGA AGAAGGCACT GAAGCTTGGG GCCAAAAAGG
241TGTTCATTGA GGATGTCAGC AGGGAGTTTG TGGAGGAGTT CATCTGGCCG GCCATCCAGT
301CCAGCGCACT GTATGAGGAC CGCTACCTCC TGGGCACCTC TCTTGCCAGG CCCTGCATCG
361CCCGCAAACA AGTGGAAATC GCCCAGCGGG AGGGGGCCAA GTATGTGTCC CACGGCGCCA
421CAGGAAAGGG GAACGATCAG GTCCGGTTTG AGCTCAGCTG CTACTCACTG GCCCCCCAGA
481TAAAGGTCAT TGCTCCCTGG AGGATGCCTG AATTCTACAA CCGGTTCAAG GGCCGCAATG
541ACCTGATGGA GTACGCAAAG CAACACGGGA TTCCCATCCC GGTCACTCCC AAGAACCCGT
601GGAGCATGGA TGAGAACCTC ATGCACATCA GCTACGAGGC TGGAATCCTG GAGAACCCCA
661AGAACCAAGC GCCTCCAGGT CTCTACACGA AGACCCAGGA CCCAGCCAAA GCCCCCAACA
721CCCCTGACAT TCTCGAGATC GAGTTCAAAA AAGGGGTCCC TGTGAAGGTG ACCAACGTCA
781AGGATGGCAC CACCCACCAG ACCTCCTTGG AGCTCTTCAT GTACCTGAAC GAAGTCGCGG
841GCAAGCATGG CGTGGGCCGT ATTGACATCG TGGAGAACCG CTTCATTGGA ATGAAGTCCC
901GAGGTATCTA CGAGACCCCA GCAGGCACCA TCCTTTACCA CGCTCATTTA GACATCGAGG
961CCTTCACCAT GGACCGGGAA GTGCGCAAAA TCAAACAAGG CCTGGGCTTG AAATTTGCTG
1021AGCTGGTGTA TACCGGTTTC TGGCACAGCC CTGAGTGTGA ATTTGTCCGC CACTGCATCG
1081CCAAGTCCCA GGAGCGAGTG GAAGGGAAAG TGCAGGTGTC CGTCCTCAAG GGCCAGGTGT
1141ACATCCTCGG CCGGGAGTCC CCACTGTCTC TCTACAATGA GGAGCTGGTG AGCATGAACG
1201TGCAGGGTGA TTATGAGCCA ACTGATGCCA CCGGGTTCAT CAACATCAAT TCCCTCAGGC
1261TGAAGGAATA TCATCGTCTC CAGAGCAAGG TCACTGCCAA ATACCCAACT TTCTTGTACA
1321AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)