Construct: ORF ccsbBroadEn_05865

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018168.1_s300c1, BRDN0000393345
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATP1A3 (478)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 478 ATP1A3 ATPase Na+/K+ transporting ... NM_152296.5 99.9% 100% 666T>G
2 human 478 ATP1A3 ATPase Na+/K+ transporting ... NM_001256213.1 98.8% 98.7% 6_38del;699T>G
3 human 478 ATP1A3 ATPase Na+/K+ transporting ... NM_001256214.2 98.7% 98.5% 6_44del;705T>G
4 human 477 ATP1A2 ATPase Na+/K+ transporting ... NM_000702.4 80.8% 86.9% (many diffs)
5 mouse 232975 Atp1a3 ATPase, Na+/K+ transporting... NM_001290469.1 90.8% 99.6% (many diffs)
6 mouse 232975 Atp1a3 ATPase, Na+/K+ transporting... XM_011250520.2 89.7% 98.1% (many diffs)
7 mouse 232975 Atp1a3 ATPase, Na+/K+ transporting... XM_011250519.2 87.2% 95.2% (many diffs)
8 mouse 232975 Atp1a3 ATPase, Na+/K+ transporting... XM_011250518.2 86.1% 93.9% (many diffs)
9 mouse 98660 Atp1a2 ATPase, Na+/K+ transporting... NM_178405.3 79.1% 86.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3105
ORF length:
3039
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GGACAAGAAA GATGACAAGG ACTCACCCAA GAAGAACAAG GGCAAGGAGC
121GCCGGGACCT GGATGACCTC AAGAAGGAGG TGGCTATGAC AGAGCACAAG ATGTCAGTGG
181AAGAGGTCTG CCGGAAATAC AACACAGACT GTGTGCAGGG TTTGACCCAC AGCAAAGCCC
241AGGAGATCCT GGCCCGGGAT GGGCCTAACG CACTCACGCC ACCGCCTACC ACCCCAGAGT
301GGGTCAAGTT TTGCCGGCAG CTCTTCGGGG GCTTCTCCAT CCTGCTGTGG ATCGGGGCTA
361TCCTCTGCTT CCTGGCCTAC GGTATCCAGG CGGGCACCGA GGACGACCCC TCTGGTGACA
421ACCTGTACCT GGGCATCGTG CTGGCGGCCG TGGTGATCAT CACTGGCTGC TTCTCCTACT
481ACCAGGAGGC CAAGAGCTCC AAGATCATGG AGTCCTTCAA GAACATGGTG CCCCAGCAAG
541CCCTGGTGAT CCGGGAAGGT GAGAAGATGC AGGTGAACGC TGAGGAGGTG GTGGTCGGGG
601ACCTGGTGGA GATCAAGGGT GGAGACCGAG TGCCAGCTGA CCTGCGGATC ATCTCAGCCC
661ACGGCTGCAA GGTGGACAAC TCCTCCCTGA CTGGCGAATC CGAGCCCCAG ACTCGCTCTC
721CCGACTGCAC GCACGACAAC CCCTTGGAGA CTCGGAACAT CACCTTCTTT TCCACCAACT
781GTGTGGAAGG CACGGCTCGG GGCGTGGTGG TGGCCACGGG CGACCGCACT GTCATGGGCC
841GTATCGCCAC CCTGGCATCA GGGCTGGAGG TGGGCAAGAC GCCCATCGCC ATCGAGATTG
901AGCACTTCAT CCAGCTCATC ACCGGCGTGG CTGTCTTCCT GGGTGTCTCC TTCTTCATCC
961TCTCCCTCAT TCTCGGATAC ACCTGGCTTG AGGCTGTCAT CTTCCTCATC GGCATCATCG
1021TGGCCAATGT CCCAGAGGGT CTGCTGGCCA CTGTCACTGT GTGTCTGACG CTGACCGCCA
1081AGCGCATGGC CCGGAAGAAC TGCCTGGTGA AGAACCTGGA GGCTGTAGAA ACCCTGGGCT
1141CCACGTCCAC CATCTGCTCA GATAAGACAG GGACCCTCAC TCAGAACCGC ATGACAGTCG
1201CCCACATGTG GTTTGACAAC CAGATCCACG AGGCTGACAC CACTGAGGAC CAGTCAGGGA
1261CCTCATTTGA CAAGAGTTCG CACACCTGGG TGGCCCTGTC TCACATCGCT GGGCTCTGCA
1321ATCGCGCTGT CTTCAAGGGT GGTCAGGACA ACATCCCTGT GCTCAAGAGG GATGTGGCTG
1381GGGATGCGTC TGAGTCTGCC CTGCTCAAGT GCATCGAGCT GTCCTCTGGC TCCGTGAAGC
1441TGATGCGTGA ACGCAACAAG AAAGTGGCTG AGATTCCCTT CAATTCCACC AACAAATACC
1501AGCTCTCCAT CCATGAGACC GAGGACCCCA ACGACAACCG ATACCTGCTG GTGATGAAGG
1561GTGCCCCCGA GCGCATCCTG GACCGCTGCT CCACCATCCT GCTACAGGGC AAGGAGCAGC
1621CTCTGGACGA GGAAATGAAG GAGGCCTTCC AGAATGCCTA CCTTGAGCTC GGTGGCCTGG
1681GCGAGCGCGT GCTTGGTTTC TGCCATTATT ACCTGCCCGA GGAGCAGTTC CCCAAGGGCT
1741TTGCCTTCGA CTGTGATGAC GTGAACTTCA CCACGGACAA CCTCTGCTTT GTGGGCCTCA
1801TGTCCATGAT CGACCCACCC CGGGCAGCCG TCCCTGACGC GGTGGGCAAG TGTCGCAGCG
1861CAGGCATCAA GGTCATCATG GTCACCGGCG ATCACCCCAT CACGGCCAAG GCCATTGCCA
1921AGGGTGTGGG CATCATCTCT GAGGGCAACG AGACTGTGGA GGACATCGCC GCCCGGCTCA
1981ACATTCCCGT CAGCCAGGTT AACCCCCGGG ATGCCAAGGC CTGCGTGATC CACGGCACCG
2041ACCTCAAGGA CTTCACCTCC GAGCAAATCG ACGAGATCCT GCAGAATCAC ACCGAGATCG
2101TCTTCGCCCG CACATCCCCC CAGCAGAAGC TCATCATTGT GGAGGGCTGT CAGAGACAGG
2161GTGCAATTGT GGCTGTGACC GGGGATGGTG TGAACGACTC CCCCGCTCTG AAGAAGGCCG
2221ACATTGGGGT GGCCATGGGC ATCGCTGGCT CTGACGTCTC CAAGCAGGCA GCTGACATGA
2281TCCTGCTGGA CGACAACTTT GCCTCCATCG TCACAGGGGT GGAGGAGGGC CGCCTGATCT
2341TCGACAACCT AAAGAAGTCC ATTGCCTACA CCCTGACCAG CAATATCCCG GAGATCACGC
2401CCTTCCTGCT GTTCATCATG GCCAACATCC CGCTGCCCCT GGGCACCATC ACCATCCTCT
2461GCATCGATCT GGGCACTGAC ATGGTCCCTG CCATCTCACT GGCGTACGAG GCTGCCGAAA
2521GCGACATCAT GAAGAGACAG CCCAGGAACC CGCGGACGGA CAAATTGGTC AATGAGAGAC
2581TCATCAGCAT GGCCTACGGG CAGATTGGAA TGATCCAGGC TCTCGGTGGC TTCTTCTCTT
2641ACTTTGTGAT CCTGGCAGAA AATGGCTTCT TGCCCGGCAA CCTGGTGGGC ATCCGGCTGA
2701ACTGGGATGA CCGCACCGTC AATGACCTGG AAGACAGTTA CGGGCAGCAG TGGACATACG
2761AGCAGAGGAA GGTGGTGGAG TTCACCTGCC ACACGGCCTT CTTTGTGAGC ATCGTTGTCG
2821TCCAGTGGGC CGATCTGATC ATCTGCAAGA CCCGGAGGAA CTCGGTCTTC CAGCAGGGCA
2881TGAAGAACAA GATCCTGATC TTCGGGCTGT TTGAGGAGAC GGCCCTGGCT GCCTTCCTGT
2941CCTACTGCCC CGGCATGGAC GTGGCCCTGC GCATGTACCC TCTCAAGCCC AGCTGGTGGT
3001TCTGTGCCTT CCCCTACAGT TTCCTCATCT TCGTCTACGA CGAAATCCGC AAACTCATCC
3061TGCGCAGGAA CCCAGGGGGT TGGGTGGAGA AGGAAACCTA CTACTGCCCA ACTTTCTTGT
3121ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)