Construct: ORF ccsbBroadEn_06036
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003887.1_s300c1, BRDN0000391893
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CREM (1390)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1390 | CREM | cAMP responsive element mod... | NM_001881.3 | 99.7% | 99.2% | 11A>T |
| 2 | human | 1390 | CREM | cAMP responsive element mod... | NM_001267566.1 | 71.1% | 70.8% | 0_1ins118;2delT |
| 3 | human | 1390 | CREM | cAMP responsive element mod... | XM_017015726.2 | 69.6% | 66.3% | (many diffs) |
| 4 | human | 1390 | CREM | cAMP responsive element mod... | XM_017015723.2 | 59.2% | 56.3% | (many diffs) |
| 5 | human | 1390 | CREM | cAMP responsive element mod... | NM_183060.2 | 58.9% | 56.1% | (many diffs) |
| 6 | human | 1390 | CREM | cAMP responsive element mod... | XM_017015722.2 | 58.9% | 56.1% | (many diffs) |
| 7 | human | 1390 | CREM | cAMP responsive element mod... | XM_024447822.1 | 56.9% | 51.6% | (many diffs) |
| 8 | human | 1390 | CREM | cAMP responsive element mod... | XM_017015721.2 | 56.7% | 51.4% | (many diffs) |
| 9 | human | 1390 | CREM | cAMP responsive element mod... | NM_183012.1 | 55.2% | 52.5% | (many diffs) |
| 10 | human | 1390 | CREM | cAMP responsive element mod... | XM_006717383.3 | 55.2% | 52.5% | (many diffs) |
| 11 | human | 1390 | CREM | cAMP responsive element mod... | XM_006717382.3 | 55% | 52.3% | (many diffs) |
| 12 | human | 1390 | CREM | cAMP responsive element mod... | NM_183013.3 | 53.2% | 48.4% | (many diffs) |
| 13 | human | 1390 | CREM | cAMP responsive element mod... | XM_017015720.1 | 53% | 48.2% | (many diffs) |
| 14 | human | 1390 | CREM | cAMP responsive element mod... | XM_017015719.2 | 52.8% | 50% | (many diffs) |
| 15 | human | 1390 | CREM | cAMP responsive element mod... | NM_182772.2 | 48.7% | 40.5% | (many diffs) |
| 16 | human | 1390 | CREM | cAMP responsive element mod... | XM_017015718.1 | 47.5% | 44.9% | (many diffs) |
| 17 | human | 1390 | CREM | cAMP responsive element mod... | XM_017015717.2 | 46.7% | 44.1% | (many diffs) |
| 18 | human | 1390 | CREM | cAMP responsive element mod... | XM_017015716.2 | 46.5% | 44% | (many diffs) |
| 19 | human | 1390 | CREM | cAMP responsive element mod... | XM_011519327.3 | 44.6% | 42.2% | (many diffs) |
| 20 | human | 1390 | CREM | cAMP responsive element mod... | XM_024447820.1 | 44.6% | 42.2% | (many diffs) |
| 21 | human | 1390 | CREM | cAMP responsive element mod... | NM_183011.1 | 44.2% | 41.8% | (many diffs) |
| 22 | human | 1390 | CREM | cAMP responsive element mod... | XM_006717379.3 | 44.2% | 41.8% | (many diffs) |
| 23 | human | 1390 | CREM | cAMP responsive element mod... | NM_181571.3 | 44% | 41.6% | (many diffs) |
| 24 | human | 1390 | CREM | cAMP responsive element mod... | XM_006717378.4 | 44% | 41.6% | (many diffs) |
| 25 | human | 1390 | CREM | cAMP responsive element mod... | XM_006717387.3 | 42.5% | 40.1% | (many diffs) |
| 26 | human | 1390 | CREM | cAMP responsive element mod... | XM_011519324.2 | 42.3% | 40% | (many diffs) |
| 27 | human | 1390 | CREM | cAMP responsive element mod... | XM_011519325.3 | 42.3% | 40% | (many diffs) |
| 28 | human | 1390 | CREM | cAMP responsive element mod... | NM_182770.3 | 41.4% | 38.4% | (many diffs) |
| 29 | human | 1390 | CREM | cAMP responsive element mod... | NM_182771.2 | 38.6% | 31.9% | (many diffs) |
| 30 | human | 1390 | CREM | cAMP responsive element mod... | NM_001267564.2 | 37.1% | 30.6% | (many diffs) |
| 31 | human | 1390 | CREM | cAMP responsive element mod... | XM_024447824.1 | 36.7% | 34.7% | (many diffs) |
| 32 | human | 1390 | CREM | cAMP responsive element mod... | XM_024447821.1 | 32.9% | 30.3% | (many diffs) |
| 33 | human | 1390 | CREM | cAMP responsive element mod... | NM_182769.3 | 32.8% | 30.2% | (many diffs) |
| 34 | human | 1390 | CREM | cAMP responsive element mod... | XM_011519330.2 | 31.5% | 29% | (many diffs) |
| 35 | mouse | 12916 | Crem | cAMP responsive element mod... | NM_001110852.1 | 80.6% | 75.1% | (many diffs) |
| 36 | mouse | 12916 | Crem | cAMP responsive element mod... | NM_001110851.1 | 61.6% | 55.3% | (many diffs) |
| 37 | mouse | 12916 | Crem | cAMP responsive element mod... | NM_001110850.2 | 49.5% | 42.7% | (many diffs) |
| 38 | mouse | 12916 | Crem | cAMP responsive element mod... | NM_001110858.2 | 49.5% | 42.7% | (many diffs) |
| 39 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_006525575.3 | 49.5% | 42.7% | (many diffs) |
| 40 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_006525576.3 | 49.5% | 42.7% | (many diffs) |
| 41 | mouse | 12916 | Crem | cAMP responsive element mod... | NM_001110857.2 | 47.3% | 40.1% | (many diffs) |
| 42 | mouse | 12916 | Crem | cAMP responsive element mod... | NM_013498.3 | 47.3% | 40.1% | (many diffs) |
| 43 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_006525573.3 | 47.3% | 40.1% | (many diffs) |
| 44 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_006525574.3 | 47.3% | 40.1% | (many diffs) |
| 45 | mouse | 12916 | Crem | cAMP responsive element mod... | NM_001271503.1 | 42.2% | 35.4% | (many diffs) |
| 46 | mouse | 12916 | Crem | cAMP responsive element mod... | NM_001271504.1 | 42.2% | 35.4% | (many diffs) |
| 47 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_006525567.3 | 42.2% | 35.4% | (many diffs) |
| 48 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_006525568.3 | 42.2% | 35.4% | (many diffs) |
| 49 | mouse | 12916 | Crem | cAMP responsive element mod... | NM_001110856.2 | 40.7% | 33.6% | (many diffs) |
| 50 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_006525565.3 | 40.7% | 33.6% | (many diffs) |
| 51 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_017317808.1 | 40.7% | 33.6% | (many diffs) |
| 52 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_006525566.3 | 39.7% | 35.2% | (many diffs) |
| 53 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_006525563.3 | 39.2% | 34.7% | (many diffs) |
| 54 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_006525564.3 | 39.2% | 34.7% | (many diffs) |
| 55 | mouse | 12916 | Crem | cAMP responsive element mod... | NM_001271505.1 | 37.7% | 33.4% | (many diffs) |
| 56 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_006525561.3 | 37.7% | 33.4% | (many diffs) |
| 57 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_006525558.3 | 35.1% | 30.2% | (many diffs) |
| 58 | mouse | 12916 | Crem | cAMP responsive element mod... | NM_001271506.1 | 34.7% | 29.8% | (many diffs) |
| 59 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_006525556.3 | 34.7% | 29.8% | (many diffs) |
| 60 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_006525557.3 | 34.7% | 29.8% | (many diffs) |
| 61 | mouse | 12916 | Crem | cAMP responsive element mod... | NM_001110859.2 | 33.5% | 28.8% | (many diffs) |
| 62 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_006525554.3 | 33.5% | 28.8% | (many diffs) |
| 63 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_006525555.3 | 33.5% | 28.8% | (many diffs) |
| 64 | mouse | 12916 | Crem | cAMP responsive element mod... | XM_011246820.2 | 33.5% | 28.8% | (many diffs) |
| 65 | mouse | 12916 | Crem | cAMP responsive element mod... | NR_073193.1 | 13.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 477
- ORF length:
- 411
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACACAAAAG 61 TTGGCATGAC CATGGTAACA GTTGAATCCC AGCATGATGG AAGTATAACA GCTTCTTTGA 121 CAGAGAGCAA GTCTGCTCAT GTGCAGACTC AGACTGGCCA AAATTCAATC CCTGCTTTAG 181 CTCAGGTAGC AGCAATTGCA GAGACAGATG AATCTGCAGA ATCAGAAGGT GTAATTGATT 241 CTCATAAACG TAGAGAAATC CTTTCACGAA GACCCTCTTA TAGGAAAATA CTGAATGAAC 301 TGTCCTCTGA TGTGCCTGGT GTTCCCAAGA TTGAAGAAGA GAGATCAGAG GAAGAAGGAA 361 CACCACCTAG TATTGCTACC ATGGCAGTAC CAACTAGCAT ATATCAGACT AGCACGGGGC 421 AATACAGTAT GTATGCTGCA ATTCGATATG ATACAGTGCT AGCTTTAAGT CTTCTCTACC 481 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 541 aac