Construct: ORF ccsbBroadEn_06055
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016910.1_s300c1, BRDN0000456217
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CSNK1A1 (1452)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001892.6 | 99.9% | 99.7% | 691C>A |
| 2 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001271741.2 | 95.7% | 95.8% | 691C>A;972_974delTTT;975_976ins39 |
| 3 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001025105.3 | 92.2% | 92% | 455_538del;775C>A |
| 4 | human | 122011 | CSNK1A1L | casein kinase 1 alpha 1 like | NM_145203.6 | 91.3% | 90.2% | (many diffs) |
| 5 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001271742.2 | 67.8% | 67.6% | 0_1ins267;188_271del;508C>A |
| 6 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526388.2 | 94.8% | 99.7% | (many diffs) |
| 7 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | NM_146087.2 | 90.7% | 95.8% | (many diffs) |
| 8 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526384.2 | 87.5% | 92% | (many diffs) |
| 9 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526385.2 | 87.3% | 91.7% | (many diffs) |
| 10 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_011247048.2 | 85.3% | 89.5% | (many diffs) |
| 11 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526383.3 | 85.2% | 89.5% | (many diffs) |
| 12 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526386.3 | 84.9% | 88.7% | (many diffs) |
| 13 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526387.2 | 83.7% | 88.4% | (many diffs) |
| 14 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XR_386023.3 | 13.8% | (many diffs) | |
| 15 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XR_386022.3 | 13.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1077
- ORF length:
- 1011
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GAGTAGCAGC GGCTCCAAGG CTGAATTCAT TGTCGGAGGG AAATATAAAC 121 TGGTACGGAA GATCGGGTCT GGCTCCTTCG GGGACATCTA TTTGGCGATC AACATCACCA 181 ACGGCGAGGA AGTGGCAGTG AAGCTAGAAT CTCAGAAGGC CAGGCATCCC CAGTTGCTGT 241 ACGAGAGCAA GCTCTATAAG ATTCTTCAAG GTGGGGTTGG CATCCCCCAC ATACGGTGGT 301 ATGGTCAGGA AAAAGACTAC AATGTACTAG TCATGGATCT TCTGGGACCT AGCCTCGAAG 361 ACCTCTTCAA TTTCTGTTCA AGAAGGTTCA CAATGAAAAC TGTACTTATG TTAGCTGACC 421 AGATGATCAG TAGAATTGAA TATGTGCATA CAAAGAATTT TATACACAGA GACATTAAAC 481 CAGATAACTT CCTAATGGGT ATTGGGCGTC ACTGTAATAA GTTATTCCTT ATTGATTTTG 541 GTTTGGCCAA AAAGTACAGA GACAACAGGA CAAGGCAACA CATACCATAC AGAGAAGATA 601 AAAACCTCAC TGGCACTGCC CGATATGCTA GCATCAATGC ACATCTTGGT ATTGAGCAGA 661 GTCGCCGAGA TGACATGGAA TCATTAGGAT ATGTTTTGAT GTATTTTAAT AGAACCAGCC 721 TGCCATGGCA AGGGCTAAAG GCTGCAACAA AGAAAAAAAA ATATGAAAAG ATTAGTGAAA 781 AGAAGATGTC CACGCCTGTT GAAGTTTTAT GTAAGGGGTT TCCTGCAGAA TTTGCGATGT 841 ACTTAAACTA TTGTCGTGGG CTACGCTTTG AGGAAGCCCC AGATTACATG TATCTGAGGC 901 AGCTATTCCG CATTCTTTTC AGGACCCTGA ACCATCAATA TGACTACACA TTTGATTGGA 961 CAATGTTAAA GCAGAAAGCA GCACAGCAGG CAGCCTCTTC CAGTGGGCAG GGTCAGCAGG 1021 CCCAAACCCC CACAGGCAAG CAAACTGACA AAACCAAGAG TAACATGAAA GGTTTCTACC 1081 CAACTTTCTT GTACAAAGTT GGcattataa gaaagcattg cttatcaatt tgttgcaacg 1141 aac