Construct: ORF ccsbBroadEn_06179

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014130.1_s300c1, BRDN0000393791
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ERG (2078)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2078 ERG ETS transcription factor ERG NM_182918.4 99.9% 100% 552C>T
2 human 2078 ERG ETS transcription factor ERG NM_001136154.1 98.3% 97.9% (many diffs)
3 human 2078 ERG ETS transcription factor ERG NM_001243428.1 98.3% 97.9% (many diffs)
4 human 2078 ERG ETS transcription factor ERG NM_001331025.2 94.9% 94.9% 552C>T;670_671ins72
5 human 2078 ERG ETS transcription factor ERG NM_004449.4 93.4% 93% (many diffs)
6 human 2078 ERG ETS transcription factor ERG NM_001136155.1 80.7% 80.7% 0_1ins276;276C>T
7 human 2078 ERG ETS transcription factor ERG NM_001243429.1 75.7% 75.7% 0_1ins276;276C>T;394_395ins72
8 human 2078 ERG ETS transcription factor ERG NM_001243432.2 63.3% 62.7% (many diffs)
9 human 2078 ERG ETS transcription factor ERG NM_001291391.1 58.5% 51.7% (many diffs)
10 mouse 13876 Erg ETS transcription factor NM_001302153.1 90.1% 97% (many diffs)
11 mouse 13876 Erg ETS transcription factor NM_133659.3 88.6% 95% (many diffs)
12 mouse 13876 Erg ETS transcription factor XM_006522894.3 88.6% 95% (many diffs)
13 mouse 13876 Erg ETS transcription factor XM_006522895.2 88.6% 95% (many diffs)
14 mouse 13876 Erg ETS transcription factor XM_006522896.3 88.6% 95% (many diffs)
15 mouse 13876 Erg ETS transcription factor NM_001302154.1 85.8% 92.6% (many diffs)
16 mouse 13876 Erg ETS transcription factor NM_001302179.1 84.5% 90.7% (many diffs)
17 mouse 13876 Erg ETS transcription factor XM_006522899.3 84.5% 90.7% (many diffs)
18 mouse 13876 Erg ETS transcription factor XM_006522904.3 83.8% 90.3% (many diffs)
19 mouse 13876 Erg ETS transcription factor NM_001302152.1 83.8% 90.1% (many diffs)
20 mouse 13876 Erg ETS transcription factor XM_006522900.2 83.8% 90.1% (many diffs)
21 mouse 13876 Erg ETS transcription factor NM_001302183.1 79.6% 85.8% (many diffs)
22 mouse 13876 Erg ETS transcription factor XM_006522903.3 79.6% 85.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1503
ORF length:
1437
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CAGCACTATT AAGGAAGCCT TATCAGTTGT GAGTGAGGAC CAGTCGTTGT
121TTGAGTGTGC CTACGGAACG CCACACCTGG CTAAGACAGA GATGACCGCG TCCTCCTCCA
181GCGACTATGG ACAGACTTCC AAGATGAGCC CACGCGTCCC TCAGCAGGAT TGGCTGTCTC
241AACCCCCAGC CAGGGTCACC ATCAAAATGG AATGTAACCC TAGCCAGGTG AATGGCTCAA
301GGAACTCTCC TGATGAATGC AGTGTGGCCA AAGGCGGGAA GATGGTGGGC AGCCCAGACA
361CCGTTGGGAT GAACTACGGC AGCTACATGG AGGAGAAGCA CATGCCACCC CCAAACATGA
421CCACGAACGA GCGCAGAGTT ATCGTGCCAG CAGATCCTAC GCTATGGAGT ACAGACCATG
481TGCGGCAGTG GCTGGAGTGG GCGGTGAAAG AATATGGCCT TCCAGACGTC AACATCTTGT
541TATTCCAGAA CATCGATGGG AAGGAACTGT GCAAGATGAC CAAGGACGAC TTCCAGAGGC
601TCACCCCCAG CTACAATGCC GACATCCTTC TCTCACATCT CCACTACCTC AGAGAGACTC
661CTCTTCCACA TTTGACTTCA GATGATGTTG ATAAAGCCTT ACAAAACTCT CCACGGTTAA
721TGCATGCTAG AAACACAGGG GGTGCAGCTT TTATTTTCCC AAATACTTCA GTATATCCTG
781AAGCTACGCA AAGAATTACA ACTAGGCCAG ATTTACCATA TGAGCCCCCC AGGAGATCAG
841CCTGGACCGG TCACGGCCAC CCCACGCCCC AGTCGAAAGC TGCTCAACCA TCTCCTTCCA
901CAGTGCCCAA AACTGAAGAC CAGCGTCCTC AGTTAGATCC TTATCAGATT CTTGGACCAA
961CAAGTAGCCG CCTTGCAAAT CCAGGCAGTG GCCAGATCCA GCTTTGGCAG TTCCTCCTGG
1021AGCTCCTGTC GGACAGCTCC AACTCCAGCT GCATCACCTG GGAAGGCACC AACGGGGAGT
1081TCAAGATGAC GGATCCCGAC GAGGTGGCCC GGCGCTGGGG AGAGCGGAAG AGCAAACCCA
1141ACATGAACTA CGATAAGCTC AGCCGCGCCC TCCGTTACTA CTATGACAAG AACATCATGA
1201CCAAGGTCCA TGGGAAGCGC TACGCCTACA AGTTCGACTT CCACGGGATC GCCCAGGCCC
1261TCCAGCCCCA CCCCCCGGAG TCATCTCTGT ACAAGTACCC CTCAGACCTC CCGTACATGG
1321GCTCCTATCA CGCCCACCCA CAGAAGATGA ACTTTGTGGC GCCCCACCCT CCAGCCCTCC
1381CCGTGACATC TTCCAGTTTT TTTGCTGCCC CAAACCCATA CTGGAATTCA CCAACTGGGG
1441GTATATACCC CAACACTAGG CTCCCCACCA GCCATATGCC TTCTCATCTG GGCACTTACT
1501ACTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1561gcaacgaac

Download FASTA (ORF) (Full)

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