Transcript: Mouse NM_001302183.1

Mus musculus ETS transcription factor (Erg), transcript variant 6, mRNA.

Source:
NCBI, updated 2017-06-14
Taxon:
Mus musculus (mouse)
Gene:
Erg (13876)
Length:
3118
CDS:
152..1471

Additional Resources:

NCBI RefSeq record:
NM_001302183.1
NBCI Gene record:
Erg (13876)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001302183.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000432206 AGCGCTACGCCTACAAGTTTG pLKO_005 1182 CDS 100% 10.800 15.120 N Erg n/a
2 TRCN0000042659 CCGATGACGTTGATAAGGCTT pLKO.1 786 CDS 100% 2.640 3.696 N Erg n/a
3 TRCN0000042662 GTCACTATTTGAGTGTGCCTA pLKO.1 220 CDS 100% 2.640 3.696 N Erg n/a
4 TRCN0000042658 GCCGACATTCTTCTCTCACAT pLKO.1 725 CDS 100% 4.950 3.960 N Erg n/a
5 TRCN0000417813 ATACTGTACATGGACATATAA pLKO_005 1681 3UTR 100% 15.000 10.500 N Erg n/a
6 TRCN0000435818 ACACCATGTATGATGTCATTT pLKO_005 1870 3UTR 100% 13.200 9.240 N Erg n/a
7 TRCN0000042661 CCTGCCATACATGGGCTCCTA pLKO.1 1273 CDS 100% 0.880 0.528 N Erg n/a
8 TRCN0000166364 CACACACACACACACACACAA pLKO.1 2952 3UTR 100% 4.950 2.475 Y KAAG1 n/a
9 TRCN0000431367 CGTCCTCAGTTAGATCCTTAT pLKO_005 890 CDS 100% 10.800 15.120 N ERG n/a
10 TRCN0000013915 GCGGTGAAAGAATATGGCCTT pLKO.1 608 CDS 100% 2.160 1.512 N ERG n/a
11 TRCN0000165520 GAGGAGGAAGAAGAGGAGAAA pLKO.1 2329 3UTR 100% 4.950 2.475 Y AP5B1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001302183.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06179 pDONR223 100% 79.6% 85.8% None (many diffs) n/a
2 TRCN0000465638 GCTAAATAAATTACTAAAGGACGC pLX_317 24.3% 79.6% 85.8% V5 (many diffs) n/a
3 ccsbBroad304_06179 pLX_304 26.4% 71% 60.4% V5 (not translated due to prior stop codon) (many diffs) n/a
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