Construct: ORF ccsbBroadEn_06391
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018281.1_s300c1, BRDN0000385346
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HNRNPK (3190)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3190 | HNRNPK | heterogeneous nuclear ribon... | NM_001318188.1 | 99.9% | 99.7% | 352A>G |
| 2 | human | 3190 | HNRNPK | heterogeneous nuclear ribon... | NM_031262.3 | 99.9% | 99.7% | 352A>G |
| 3 | human | 3190 | HNRNPK | heterogeneous nuclear ribon... | XM_017014668.1 | 99.9% | 99.7% | 352A>G |
| 4 | human | 3190 | HNRNPK | heterogeneous nuclear ribon... | NM_002140.4 | 99% | 98.7% | (many diffs) |
| 5 | human | 3190 | HNRNPK | heterogeneous nuclear ribon... | NM_031263.4 | 99% | 98.7% | (many diffs) |
| 6 | human | 3190 | HNRNPK | heterogeneous nuclear ribon... | XM_005251960.2 | 99% | 98.7% | (many diffs) |
| 7 | human | 3190 | HNRNPK | heterogeneous nuclear ribon... | NM_001318186.1 | 94.8% | 94.8% | 330_331ins72 |
| 8 | human | 3190 | HNRNPK | heterogeneous nuclear ribon... | XM_011518616.2 | 94.8% | 94.8% | 330_331ins72 |
| 9 | human | 3190 | HNRNPK | heterogeneous nuclear ribon... | XM_017014669.1 | 94.8% | 94.8% | 330_331ins72 |
| 10 | human | 3190 | HNRNPK | heterogeneous nuclear ribon... | NM_001318187.1 | 93.9% | 93.7% | (many diffs) |
| 11 | human | 3190 | HNRNPK | heterogeneous nuclear ribon... | XM_005251963.4 | 93.9% | 93.7% | (many diffs) |
| 12 | human | 3190 | HNRNPK | heterogeneous nuclear ribon... | XM_005251965.3 | 93.9% | 93.7% | (many diffs) |
| 13 | human | 399881 | HNRNPKP3 | heterogeneous nuclear ribon... | NR_033868.1 | 52.2% | (many diffs) | |
| 14 | mouse | 15387 | Hnrnpk | heterogeneous nuclear ribon... | NM_001360490.1 | 93.8% | 99.7% | (many diffs) |
| 15 | mouse | 15387 | Hnrnpk | heterogeneous nuclear ribon... | NM_025279.3 | 93.8% | 99.7% | (many diffs) |
| 16 | mouse | 15387 | Hnrnpk | heterogeneous nuclear ribon... | NM_001301340.1 | 93% | 98.7% | (many diffs) |
| 17 | mouse | 15387 | Hnrnpk | heterogeneous nuclear ribon... | NM_001301341.1 | 93% | 98.7% | (many diffs) |
| 18 | mouse | 15387 | Hnrnpk | heterogeneous nuclear ribon... | NM_001301343.1 | 93% | 98.7% | (many diffs) |
| 19 | mouse | 15387 | Hnrnpk | heterogeneous nuclear ribon... | XM_006517103.4 | 93% | 98.7% | (many diffs) |
| 20 | mouse | 15387 | Hnrnpk | heterogeneous nuclear ribon... | XM_006517104.3 | 93% | 98.7% | (many diffs) |
| 21 | mouse | 15387 | Hnrnpk | heterogeneous nuclear ribon... | NM_001360493.1 | 92.9% | 98.7% | (many diffs) |
| 22 | mouse | 15387 | Hnrnpk | heterogeneous nuclear ribon... | NM_001360491.1 | 92.1% | 97.6% | (many diffs) |
| 23 | mouse | 15387 | Hnrnpk | heterogeneous nuclear ribon... | NM_001301345.1 | 88.7% | 94.8% | (many diffs) |
| 24 | mouse | 15387 | Hnrnpk | heterogeneous nuclear ribon... | NM_001360495.1 | 88.7% | 94.8% | (many diffs) |
| 25 | mouse | 15387 | Hnrnpk | heterogeneous nuclear ribon... | NM_001301344.1 | 87.9% | 93.7% | (many diffs) |
| 26 | mouse | 15387 | Hnrnpk | heterogeneous nuclear ribon... | NM_001360494.1 | 87.9% | 93.7% | (many diffs) |
| 27 | mouse | 15387 | Hnrnpk | heterogeneous nuclear ribon... | NR_153503.1 | 45.3% | (many diffs) | |
| 28 | mouse | 15387 | Hnrnpk | heterogeneous nuclear ribon... | NR_153501.1 | 45.2% | (many diffs) | |
| 29 | mouse | 15387 | Hnrnpk | heterogeneous nuclear ribon... | NR_153502.1 | 44.3% | (many diffs) | |
| 30 | mouse | 15387 | Hnrnpk | heterogeneous nuclear ribon... | NR_153504.1 | 42.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1455
- ORF length:
- 1389
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA AACTGAACAG CCAGAAGAAA CCTTCCCTAA CACTGAAACC AATGGTGAAT 121 TTGGTAAACG CCCTGCAGAA GATATGGAAG AGGAACAAGC ATTTAAAAGA TCTAGAAACA 181 CTGATGAGAT GGTTGAATTA CGCATTCTGC TTCAGAGCAA GAATGCTGGG GCAGTGATTG 241 GAAAAGGAGG CAAGAATATT AAGGCTCTCC GTACAGACTA CAATGCCAGT GTTTCAGTCC 301 CAGACAGCAG TGGCCCCGAG CGCATATTGA GTATCAGTGC TGATATTGAA ACAATTGGAG 361 AAATTCTGAA GAAAATCATC CCTACCTTGG AAGAGGGCCT GCAGTTGCCA TCACCCGCTG 421 CAACCAGCCA GCTCCCGCTC GAATCTGATG CTGTGGAATG CTTAAATTAC CAACACTATA 481 AAGGAAGTGA CTTTGACTGC GAGTTGAGGC TGTTGATTCA TCAGAGTCTA GCAGGAGGAA 541 TTATTGGGGT CAAAGGTGCT AAAATCAAAG AACTTCGAGA GAACACTCAA ACCACCATCA 601 AGCTTTTCCA GGAATGCTGT CCTCATTCCA CTGACAGAGT TGTTCTTATT GGAGGAAAAC 661 CCGATAGGGT TGTAGAGTGC ATAAAGATCA TCCTTGATCT TATATCTGAG TCTCCCATCA 721 AAGGACGTGC ACAGCCTTAT GATCCCAATT TTTACGATGA AACCTATGAT TATGGTGGTT 781 TTACAATGAT GTTTGATGAC CGTCGCGGAC GCCCAGTGGG ATTTCCCATG CGGGGAAGAG 841 GTGGTTTTGA CAGAATGCCT CCTGGTCGGG GTGGGCGTCC CATGCCTCCA TCTAGAAGAG 901 ATTATGATGA TATGAGCCCT CGTCGAGGAC CACCTCCCCC TCCTCCCGGA CGAGGCGGCC 961 GGGGTGGTAG CAGAGCTCGG AATCTTCCTC TTCCTCCACC ACCACCACCT AGAGGGGGAG 1021 ACCTCATGGC CTATGACAGA AGAGGGAGAC CTGGAGACCG TTACGACGGC ATGGTTGGTT 1081 TCAGTGCTGA TGAAACTTGG GACTCTGCAA TAGATACATG GAGCCCATCA GAATGGCAGA 1141 TGGCTTATGA ACCACAGGGT GGCTCCGGAT ATGATTATTC CTATGCAGGG GGTCGTGGCT 1201 CATATGGTGA TCTTGGTGGA CCTATTATTA CTACACAAGT AACTATTCCC AAAGATTTGG 1261 CTGGATCTAT TATTGGCAAA GGTGGTCAGC GGATTAAACA AATCCGTCAT GAGTCGGGAG 1321 CTTCGATCAA AATTGATGAG CCTTTAGAAG GATCCGAAGA TCGGATCATT ACCATTACAG 1381 GAACACAGGA CCAGATACAG AATGCACAGT ATTTGCTGCA GAACAGTGTG AAGCAGTATT 1441 CTGGAAAGTT TTTCTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1501 tatcaatttg ttgcaacgaa c