Construct: ORF ccsbBroadEn_06397
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010797.1_s300c1, BRDN0000394660
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HP (3240)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3240 | HP | haptoglobin | NM_005143.5 | 99.5% | 99.5% | (many diffs) |
| 2 | human | 3240 | HP | haptoglobin | NM_001126102.2 | 85.3% | 85.4% | 84_85ins177;780C>T |
| 3 | human | 3240 | HP | haptoglobin | NM_001318138.2 | 85.2% | 84.9% | (many diffs) |
| 4 | human | 3250 | HPR | haptoglobin-related protein | NM_020995.3 | 81.2% | 78.1% | (many diffs) |
| 5 | human | 3250 | HPR | haptoglobin-related protein | XM_024450251.1 | 80% | 76.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1287
- ORF length:
- 1218
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGTGCCCTG GGAGCTGTCA TTGCCCTCCT GCTCTGGGGA CAGCTTTTTG 121 CAGTGGACTC AGGCAATGAT GTCACGGATA TCGCAGATGA CGGCTGCCCG AAGCCCCCCG 181 AGATTGCACA TGGCTATGTG GAGCACTCGG TTCGCTACCA GTGTAAGAAC TACTACAAAC 241 TGCGCACAGA AGGAGATGGA GTGTACACCT TAAACAATGA GAAGCAGTGG ATAAATAAGG 301 CTGTTGGAGA TAAACTTCCT GAATGTGAAG CAGATGACGG CTGCCCGAAG CCCCCCGAGA 361 TTGCACATGG CTATGTGGAG CACTCGGTTC GCTACCAGTG TAAGAACTAC TACAAACTGC 421 GCACAGAAGG AGATGGAGTG TACACCTTAA ACAATGAGAA GCAGTGGATA AATAAGGCTG 481 TTGGAGATAA ACTTCCTGAA TGTGAAGCAG TATGTGGGAA GCCCAAGAAT CCGGCAAACC 541 CAGTGCAGCG GATCCTGGGT GGACACCTGG ATGCCAAAGG CAGCTTTCCC TGGCAGGCTA 601 AGATGGTTTC CCACCATAAT CTCACCACAG GTGCCACGCT GATCAATGAA CAATGGCTGC 661 TGACCACGGC TAAAAATCTC TTCCTGAACC ATTCAGAAAA TGCAACAGCG AAAGACATTG 721 CCCCTACTTT AACACTCTAT GTGGGGAAAA AGCAGCTTGT AGAGATTGAG AAGGTTGTTC 781 TACACCCTAA CTACTCCCAG GTAGATATTG GGCTCATCAA ACTCAAACAG AAGGTGTCTG 841 TTAATGAGAG AGTGATGCCC ATCTGCCTAC CTTCAAAGGA TTATGCAGAA GTAGGGCGTG 901 TGGGTTATGT TTCTGGCTGG GGGCGAAATG CCAATTTTAA ATTTACTGAC CATCTGAAGT 961 ATGTCATGCT GCCTGTGGCT GACCAAGACC AATGCATAAG GCATTATGAA GGCAGCACAG 1021 TCCCTGAAAA GAAGACACCG AAGAGCCCTG TAGGGGTGCA GCCCATACTG AATGAACACA 1081 CCTTCTGTGC TGGCATGTCT AAGTACCAAG AAGACACCTG CTATGGCGAT GCGGGCAGTG 1141 CCTTTGCCGT TCACGACCTG GAGGAGGACA CCTGGTATGC GACTGGGATC TTAAGCTTTG 1201 ATAAGAGCTG TGCTGTGGCT GAGTATGGTG TGTATGTGAA GGTGACTTCC ATCCAGGACT 1261 GGGTTCAGAA GACCATAGCT GAGAACTTGC CAACTTTCTT GTACAAAGTt ggcattataa 1321 gaaagcattg cttatcaatt tgttgcaacg aac