Construct: ORF ccsbBroadEn_06433

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006879.1_s300c1, BRDN0000457327
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IGHMBP2 (3508)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3508 IGHMBP2 immunoglobulin mu DNA bindi... NM_002180.2 99.8% 99.7% (many diffs)
2 human 3508 IGHMBP2 immunoglobulin mu DNA bindi... XR_949903.3 71.9% (many diffs)
3 human 3508 IGHMBP2 immunoglobulin mu DNA bindi... XM_005273974.2 65.9% 65.9% 0_1ins1011;1000A>G;1305C>T
4 human 3508 IGHMBP2 immunoglobulin mu DNA bindi... XM_017017669.2 65.9% 65.9% 0_1ins1011;1000A>G;1305C>T
5 human 3508 IGHMBP2 immunoglobulin mu DNA bindi... XM_017017670.2 65.9% 65.9% 0_1ins1011;1000A>G;1305C>T
6 human 3508 IGHMBP2 immunoglobulin mu DNA bindi... XM_005273975.3 61% 58% (many diffs)
7 human 3508 IGHMBP2 immunoglobulin mu DNA bindi... XM_011544994.1 58.5% 58.4% (many diffs)
8 human 3508 IGHMBP2 immunoglobulin mu DNA bindi... XM_017017671.2 54.9% 54.6% (many diffs)
9 human 3508 IGHMBP2 immunoglobulin mu DNA bindi... XM_005273976.2 49.6% 43.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3048
ORF length:
2979
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCCTCGGCA GCTGTGGAGA GCTTCGTGAC CAAGCAACTG GACCTGCTGG
121AGCTCGAGAG AGACGCGGAG GTGGAGGAGC GCAGGTCCTG GCAGGAGAAC ATCTCTCTGA
181AAGAGCTCCA GAGCCGAGGC GTGTGTTTGC TGAAGCTGCA GGTATCCAGC CAGCGCACTG
241GGCTGTACGG ACGGCTGCTG GTCACCTTTG AGCCCAGGCG ATACGGGTCC GCGGCAGCTC
301TTCCCAGTAA CAGCTTTACT TCTGGTGATA TCGTGGGCCT GTACGATGCT GCTAATGAGG
361GCAGTCAGCT GGCCACTGGG ATCTTGACCC GGGTCACCCA GAAGTCGGTC ACGGTGGCCT
421TTGATGAGTC CCACGATTTC CAGTTGAGCT TGGACCGAGA GAATTCCTAC AGACTGTTAA
481AACTTGCCAA TGATGTCACT TACAGGCGAC TGAAAAAAGC CCTGATTGCT CTAAAGAAGT
541ATCATTCTGG CCCAGCCTCC TCACTCATAG AAGTGCTCTT TGGCAGATCT GCTCCCAGTC
601CTGCCAGTGA AATACACCCG CTGACATTCT TCAACACCTG CCTGGACACC TCCCAGAAAG
661AAGCGGTTTC ATTTGCGCTG TCTCAGAAAG AACTTGCCAT CATCCATGGA CCTCCTGGCA
721CTGGGAAAAC CACGACTGTG GTTGAGATCA TTCTTCAAGC TGTGAAACAA GGCTTAAAGG
781TTCTGTGCTG CGCCCCCTCC AACATCGCCG TGGACAATCT GGTGGAGCGC CTGGCTCTGT
841GTAAGCAGCG GATTCTGCGC CTGGGACACC CTGCCCGCCT CCTGGAGTCC ATTCAGCAGC
901ACTCCCTGGA TGCGGTTTTA GCGCGGAGCG ACAGTGCCCA GATTGTTGCA GATATCAGGA
961AGGACATCGA CCAGGTCTTT GTGAAAAACA AAAAGACCCA GGATAAGAGA GAGAAAAGTA
1021ATTTTCGAAA TGAAATTAAG CTGTTAAGAA AAGAACTGAA GGAGAGGGAA GAAGCAGCTA
1081TGCTCGAGAG CCTCACTTCG GCAAACGTGG TCCTTGCAAC AAACACAGGT GCGTCTGCCG
1141ATGGCCCCCT GAAGTTGCTG CCCGAGAGCT ACTTCGACGT GGTGGTCATT GACGAGTGTG
1201CCCAGGCCCT CGAGGCGAGC TGCTGGATCC CCCTGCTGAA GGCCAGAAAG TGCATCCTGG
1261CGGGCGATCA CAAGCAGCTG CCCCCCACCA CAGTCTCTCA CAAGGCTGCG CTGGCAGGAC
1321TGTCACTCAG CCTGATGGAA CGCCTGGCTG AGGAGTACGG CGCGAGGGTG GTGCGGACAC
1381TGACGGTGCA GTACCGCATG CACCAGGCTA TCATGCGCTG GGCCTCAGAC ACCATGTACC
1441TTGGGCAGCT CACAGCCCAC TCTTCCGTGG CAAGGCACCT CCTGAGGGAC CTCCCAGGTG
1501TGGCTGCCAC AGAAGAGACG GGTGTGCCCC TGCTCTTGGT GGACACCGCC GGCTGCGGGC
1561TGTTTGAGCT GGAGGAGGAG GACGAACAGT CGAAAGGGAA CCCTGGCGAA GTCCGCCTCG
1621TCAGTTTGCA CATCCAGGCT CTGGTGGACG CTGGTGTTCC AGCCCGTGAC ATTGCTGTGG
1681TCTCGCCATA CAACCTCCAG GTGGACCTGC TCAGACAGAG CCTTGTGCAC AGGCACCCTG
1741AGCTTGAAAT CAAGTCTGTC GATGGCTTCC AAGGCCGAGA GAAGGAGGCC GTGATACTGT
1801CCTTCGTCAG ATCCAACAGG AAAGGTGAAG TTGGTTTTCT TGCTGAGGAC CGGAGGATCA
1861ACGTGGCTGT CACCCGTGCC CGACGCCACG TGGCGGTCAT CTGTGACTCC CGTACTGTCA
1921ACAACCATGC ATTTTTGAAG ACCCTGGTGG AGTATTTCAC ACAGCATGGG GAAGTACGCA
1981CGGCCTTTGA GTATCTTGAC GATATTGTCC CAGAAAACTA TTCCCATGAG AACTCCCAGG
2041GTTCCAGCCA CGCTGCCACC AAGCCCCAGG GACCTGCTGC GTCCACCAGG ACCGGAAGCC
2101AGCGGCAGGA GGGAGGCCAG GAGGCTGCAG CACCTGCCAG ACAGGGCCGG AAGAAGCCGG
2161CTGGGAAGTC TCTGGCCTCT GAAGCTCCAT CTCAGCCCAG CCTCAACGGA GGCAGCCCAG
2221AGGGAGTGGA GAGCCAAGAT GGCGTGGACC ACTTCCGGGC CATGATAGTG GAGTTCATGG
2281CCAGCAAGAA GATGCAGTTG GAGTTTCCTC CTTCCCTCAA TTCCCACGAC AGGCTGCGGG
2341TCCACCAAAT AGCCGAGGAG CACGGGCTGA GGCACGACAG TTCTGGGGAA GGGAAGAGGA
2401GGTTCATCAC TGTGAGCAAG AGGGCCCCGC GACCCCGAGC AGCCCTGGGA CCCCCAGCAG
2461GGACCGGTGG CCCAGCCCCT CTCCAGCCAG TGCCCCCTAC CCCTGCGCAG ACAGAGCAGC
2521CTCCCAGGGA GCAGCGTGGC CCAGACCAGC CTGATCTGAG GACGCTGCAC CTGGAGAGAC
2581TGCAGAGGGT CAGGAGCGCG CAGGGGCAGC CCGCCAGCAA GGAGCAGCAG GCCTCAGGGC
2641AGCAGAAACT TCCAGAAAAG AAAAAGAAAA AAGCCAAAGG ACATCCGGCC ACAGATCTGC
2701CCACGGAGGA GGACTTTGAG GCCCTGGTTT CTGCCGCCGT TAAGGCTGAT AACACCTGCG
2761GCTTTGCCAA GTGCACAGCC GGCGTCACAA CCCTGGGCCA GTTCTGCCAG CTCTGCAGCC
2821GCCGCTACTG CCTCAGCCAC CACCTGCCCG AGATCCATGG CTGCGGTGAG AGGGCTCGCG
2881CCCATGCCCG GCAGAGAATC AGCCGGGAAG GGGTCCTCTA TGCCGGCAGC GGGACCAAGA
2941ACGGATCCCT GGACCCAGCC AAGAGGGCCC AGCTGCAGAG GAGGCTGGAT AAGAAGCTGA
3001GTGAGCTCAG CAACCAGAGG ACCAGCCGGA GGAAGGAGAG GGGGACGTTG CCAACTTTCT
3061TGTACAAAGT TGGcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)