Construct: ORF ccsbBroadEn_06466
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014051.1_s300c1, BRDN0000396811
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- JUP (3728)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3728 | JUP | junction plakoglobin | NM_001352773.1 | 99.8% | 99.7% | (many diffs) |
| 2 | human | 3728 | JUP | junction plakoglobin | NM_001352774.1 | 99.8% | 99.7% | (many diffs) |
| 3 | human | 3728 | JUP | junction plakoglobin | NM_001352775.1 | 99.8% | 99.7% | (many diffs) |
| 4 | human | 3728 | JUP | junction plakoglobin | NM_001352776.1 | 99.8% | 99.7% | (many diffs) |
| 5 | human | 3728 | JUP | junction plakoglobin | NM_001352777.1 | 99.8% | 99.7% | (many diffs) |
| 6 | human | 3728 | JUP | junction plakoglobin | NM_002230.4 | 99.8% | 99.7% | (many diffs) |
| 7 | human | 3728 | JUP | junction plakoglobin | NM_021991.3 | 99.8% | 99.7% | (many diffs) |
| 8 | human | 3728 | JUP | junction plakoglobin | XM_006721874.3 | 99.8% | 99.7% | (many diffs) |
| 9 | human | 3728 | JUP | junction plakoglobin | XM_006721875.1 | 99.8% | 99.7% | (many diffs) |
| 10 | human | 3728 | JUP | junction plakoglobin | XM_011524753.2 | 99.8% | 99.7% | (many diffs) |
| 11 | human | 3728 | JUP | junction plakoglobin | XM_011524756.1 | 99.8% | 99.7% | (many diffs) |
| 12 | human | 3728 | JUP | junction plakoglobin | XM_011524758.1 | 99.8% | 99.7% | (many diffs) |
| 13 | human | 3728 | JUP | junction plakoglobin | XM_017024590.1 | 99.8% | 99.7% | (many diffs) |
| 14 | human | 3728 | JUP | junction plakoglobin | XM_017024588.2 | 97.5% | 97.5% | (many diffs) |
| 15 | mouse | 16480 | Jup | junction plakoglobin | NM_010593.2 | 89.6% | 98.1% | (many diffs) |
| 16 | mouse | 16480 | Jup | junction plakoglobin | XM_006532315.3 | 89.6% | 98.1% | (many diffs) |
| 17 | mouse | 16480 | Jup | junction plakoglobin | XM_006532316.1 | 89.6% | 98.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2301
- ORF length:
- 2235
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GGTGATGAAC CTGATGGAGC AGCCTATCAA GGTGACTGAG TGGCAGCAGA 121 CATACACCTA CGACTCGGGT ATCCACTCGG GCGCCAACAC CTGCGTGCCC TCCGTCAGCA 181 GCAAGGGCAT CATGGAGGAG GATGAGGCCT GCGGGCGCCA GTACACGCTC AAGAAAACCA 241 CCACTTACAC CCAGGGGGTG CCCCCCAGCC AAGGTGACCT GGAGTACCAG ATGTCCACAA 301 CAGCCAGGGC CAAACGGGTG CGGGAGGCCA TGTGCCCTGG TGTGTCAGGC GAGGACAGCT 361 CGCTTCTGCT GGCCACCCAG GTGGAGGGGC AGGCCACCAA CCTGCAGCGA CTGGCCGAGC 421 CGTCCCAGCT GCTCAAGTCG GCCATTGTGC ATCTCATCAA CTACCAGGAT GATGCCGAGC 481 TGGCCACTCG CGCCCTGCCC GAGCTCACCA AACTGCTCAA CGACGAGGAC CCGGTGGTGG 541 TGACCAAGGC GGCCATGATT GTGAACCAGC TGTCGAAGAA GGAGGCGTCG CGGCGGGCCC 601 TGATGGGCTC GCCCCAGCTG GTGGCCGCTG TCGTGCGTAC CATGCAGAAT ACCAGCGACC 661 TGGACACAGC CCGCTGCACC ACCAGCATCC TGCACAACCT CTCCCACCAC CGGGAGGGGC 721 TGCTCGCCAT CTTCAAGTCG GGTGGCATCC CTGCTCTGGT CCGCATGCTC AGCTCCCCTG 781 TGGAGTCGGT CCTGTTCTAT GCCATCACCA CGCTGCACAA CCTGCTCCTG TACCAGGAGG 841 GCGCCAAGAT GGCCGTGCGC CTGGCCGACG GGCTGCAAAA GATGGTGCCC CTGCTCAACA 901 AGAACAACCC CAAGTTCCTG GCCATCACCA CCGACTGCCT GCAGCTCCTG GCCTACGGCA 961 ACCAGGAGAG CAAGCTGATC ATCCTGGCCA ATGGTGGGCC CCAGGCCCTC GTGCAGATCA 1021 TGCGTAACTA CAGTTATGAA AAGCTGCTCT GGACCACCAG TCGTGTGCTC AAGGTGCTAT 1081 CCGTGTGTCC CAGCAATAAG CCTGCCATTG TGGAGGCTGG TGGGATGCAG GCCCTGGGCA 1141 AGCACCTGAC CAGCAACAGC CCCCGCCTGG TGCAGAACTG CCTGTGGACC CTGCGCAACC 1201 TCTCAGATGT GGCCACCAAG CAGGAGGGCC TGGAGAGTGT GCTGAAGATT CTGGTGAATC 1261 AGCTGAGTGT GGATGACGTC AACGTCCTCA CCTGTGCCAC GGGCACACTC TCCAACCTGA 1321 CATGCAACAA CAGCAAGAAC AAGACGCTGG TGACACAGAA CAGCGGTGTG GAGGCTCTCA 1381 TCCATGCCAT CCTGCGTGCT GGTGACAAGG ACGACATCAC GGAGCCTGCC GTCTGCGCTC 1441 TGCGCCACCT CACTAGCCGC CACCCTGAGG CCGAGATGGC CCAGAACTCT GTGCGTCTCA 1501 ACTATGGCAT CCCAGCCATC GTGAAGCTGC TCAACCAGCC CAACCAGTGG CCACTGGTCA 1561 AGGCAACCAT CGGCTTGATC AGGAATCTGG CCCTGTGCCC AGCCAACCAT GCCCCGCTGC 1621 AGGAGGCAGC GGTCATCCCC CGCCTCGTCC AACTGCTGGT GAAGGCCCAC CAGGATGCCC 1681 AGCGCCACGT AGCTGCAGGC ACACAGCAGC CCTACACGGA TGGTGTGAGG ATGGAGGAGA 1741 TTGTGGAGGG CTGCACCGGA GCACTGCACA TCCTCGCCCG GGACCCCATG AACCGCATGG 1801 AGATCTTCCG GCTCAACACC ATTCCCCTGT TTGTGCAGCT CCTGTACTCG TCGGTGGAGA 1861 ACATCCAGCG CGTGGCTGCC GGGGTGCTGT GTGAGCTGGC CCAGGACAAG GAGGCGGCCG 1921 ACGCCATTGA TGCAGAGGGG GCCTCGGCCC CACTCATGGA GTTGCTGCAC TCCCGCAACG 1981 AGGGCACTGC CACCTACGCT GCTGCCGTCC TGTTCCGCAT CTCCGAGGAC AAGAACCCAG 2041 ACTACCGGAA GCGCGTGTCC GTGGAGCTCA CCAACTCCCT CTTCAAGCAT GACCCGGCTG 2101 CCTGGGAGGC TGCCCAGAGC ATGATTCCCA TCAATGAGCC CTATGGAGAT GACTTGGATG 2161 CCACCTACCG CCCCATGTAC TCCAGCGATG TGCCCCTTGA CCCGCTGGAG ATGCACATGG 2221 ACATGGATGG AGACTACCCC ATCGACACCT ACAGCGACGG CCTCAGGCCC CCGTACCCCA 2281 CTGCAAACCA CATGCTGGCC TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 2341 attgcttatc aatttgttgc aacgaac