Construct: ORF ccsbBroadEn_06546

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003935.1_s300c1, BRDN0000398307
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LYN (4067)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4067 LYN LYN proto-oncogene, Src fam... NM_002350.4 99.9% 100% 210C>T
2 human 4067 LYN LYN proto-oncogene, Src fam... NM_001111097.3 95.8% 95.8% 66_67ins63;147C>T
3 human 4067 LYN LYN proto-oncogene, Src fam... XM_017013416.1 95.8% 95.8% 66_67ins63;147C>T
4 human 4067 LYN LYN proto-oncogene, Src fam... XM_011517529.3 71.3% 66.9% (many diffs)
5 human 4067 LYN LYN proto-oncogene, Src fam... XM_017013415.2 44.8% 40.4% (many diffs)
6 mouse 17096 Lyn LYN proto-oncogene, Src fam... NM_001111096.1 88.8% 96% (many diffs)
7 mouse 17096 Lyn LYN proto-oncogene, Src fam... NM_010747.2 84.8% 92.1% (many diffs)
8 mouse 17096 Lyn LYN proto-oncogene, Src fam... XM_011249939.2 73.1% 80.2% (many diffs)
9 mouse 666513 Gm11787 predicted gene 11787 XM_017320471.2 51.4% 53.7% (many diffs)
10 mouse 108168924 LOC108168924 uncharacterized LOC108168924 XR_001784222.1 9.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1605
ORF length:
1536
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGATGTATA AAATCAAAAG GGAAAGACAG CTTGAGTGAC GATGGAGTAG
121ATTTGAAGAC TCAACCAGTA CGTAATACTG AAAGAACTAT TTATGTGAGA GATCCAACGT
181CCAATAAACA GCAAAGGCCA GTTCCAGAAT CTCAGCTTTT ACCTGGACAG AGGTTTCAAA
241CTAAAGATCC AGAGGAACAA GGAGACATTG TGGTAGCTTT GTACCCCTAT GATGGCATCC
301ACCCGGACGA CTTGTCTTTC AAGAAAGGAG AGAAGATGAA AGTCCTGGAG GAGCATGGAG
361AATGGTGGAA AGCAAAGTCC CTTTTAACAA AAAAAGAAGG CTTCATCCCC AGCAACTATG
421TGGCCAAACT CAACACCTTA GAAACAGAAG AGTGGTTTTT CAAGGATATA ACCAGGAAGG
481ACGCAGAAAG GCAGCTTTTG GCACCAGGAA ATAGCGCTGG AGCTTTCCTT ATTAGAGAAA
541GTGAAACATT AAAAGGAAGC TTCTCTCTGT CTGTCAGAGA CTTTGACCCT GTGCATGGTG
601ATGTTATTAA GCACTACAAA ATTAGAAGTC TGGATAATGG GGGCTATTAC ATCTCTCCAC
661GAATCACTTT TCCCTGTATC AGCGACATGA TTAAACATTA CCAAAAGCAG GCAGATGGCT
721TGTGCAGAAG ATTGGAGAAG GCTTGTATTA GTCCCAAGCC ACAGAAGCCA TGGGATAAAG
781ATGCCTGGGA GATCCCCCGG GAGTCCATCA AGTTGGTGAA AAGGCTTGGC GCTGGGCAGT
841TTGGGGAAGT CTGGATGGGT TACTATAACA ACAGTACCAA GGTGGCTGTG AAAACCCTGA
901AGCCAGGAAC TATGTCTGTG CAAGCCTTCC TGGAAGAAGC CAACCTCATG AAGACCCTGC
961AGCATGACAA GCTCGTGAGG CTCTACGCTG TGGTCACCAG GGAGGAGCCC ATTTACATCA
1021TCACCGAGTA CATGGCCAAG GGCAGTTTGC TGGATTTCCT GAAGAGCGAT GAAGGTGGCA
1081AAGTGCTGCT TCCAAAGCTC ATTGACTTTT CTGCTCAGAT TGCAGAGGGA ATGGCATACA
1141TCGAGCGGAA GAACTACATT CACCGGGACC TGCGAGCAGC TAATGTTCTG GTCTCCGAGT
1201CACTCATGTG CAAAATTGCA GATTTTGGCC TTGCTAGAGT AATTGAAGAT AATGAGTACA
1261CAGCAAGGGA AGGTGCTAAG TTCCCTATTA AGTGGACGGC TCCAGAAGCA ATCAACTTTG
1321GATGTTTCAC TATTAAGTCT GATGTGTGGT CCTTTGGAAT CCTCCTATAC GAAATTGTCA
1381CCTATGGGAA AATTCCCTAC CCAGGGAGAA CTAATGCCGA CGTGATGACC GCCCTGTCCC
1441AGGGCTACAG GATGCCCCGT GTGGAGAACT GCCCAGATGA GCTCTATGAC ATTATGAAAA
1501TGTGCTGGAA AGAAAAGGCA GAAGAGAGAC CAACGTTTGA CTACTTACAG AGCGTCCTGG
1561ATGATTTCTA CACAGCCACG GAAGGGCAAT ACCAGCAGCA GCCTTTGCCA ACTTTCTTGT
1621ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)