Construct: ORF ccsbBroadEn_06550
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003606.1_s300c1, BRDN0000389961
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MAG (4099)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4099 | MAG | myelin associated glycoprotein | NM_002361.4 | 99.8% | 100% | 399C>T;1209C>T |
| 2 | human | 4099 | MAG | myelin associated glycoprotein | NM_001199216.1 | 95.8% | 96% | 0_1ins75;324C>T;1134C>T |
| 3 | human | 4099 | MAG | myelin associated glycoprotein | NM_080600.2 | 91.8% | 91.6% | (many diffs) |
| 4 | mouse | 17136 | Mag | myelin-associated glycoprotein | NM_001346084.1 | 87.4% | 94.2% | (many diffs) |
| 5 | mouse | 17136 | Mag | myelin-associated glycoprotein | NM_001346085.1 | 87.4% | 94.2% | (many diffs) |
| 6 | mouse | 17136 | Mag | myelin-associated glycoprotein | XM_006539590.2 | 87.4% | 94.2% | (many diffs) |
| 7 | mouse | 17136 | Mag | myelin-associated glycoprotein | XM_006539591.3 | 87.4% | 94.2% | (many diffs) |
| 8 | mouse | 17136 | Mag | myelin-associated glycoprotein | XM_011250438.2 | 87.4% | 94.2% | (many diffs) |
| 9 | mouse | 17136 | Mag | myelin-associated glycoprotein | XM_011250439.2 | 87.4% | 94.2% | (many diffs) |
| 10 | mouse | 17136 | Mag | myelin-associated glycoprotein | XM_011250440.2 | 87.4% | 94.2% | (many diffs) |
| 11 | mouse | 17136 | Mag | myelin-associated glycoprotein | XM_017322007.1 | 87.4% | 94.2% | (many diffs) |
| 12 | mouse | 17136 | Mag | myelin-associated glycoprotein | NM_001346089.1 | 81.2% | 87.7% | (many diffs) |
| 13 | mouse | 17136 | Mag | myelin-associated glycoprotein | NM_001346086.1 | 81.1% | 86.2% | (many diffs) |
| 14 | mouse | 17136 | Mag | myelin-associated glycoprotein | NM_001346087.1 | 81.1% | 86.2% | (many diffs) |
| 15 | mouse | 17136 | Mag | myelin-associated glycoprotein | NM_001346088.1 | 81.1% | 86.2% | (many diffs) |
| 16 | mouse | 17136 | Mag | myelin-associated glycoprotein | NM_010758.3 | 81.1% | 86.2% | (many diffs) |
| 17 | mouse | 17136 | Mag | myelin-associated glycoprotein | XM_011250441.2 | 81.1% | 86.2% | (many diffs) |
| 18 | mouse | 17136 | Mag | myelin-associated glycoprotein | XM_017322008.1 | 81.1% | 86.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1944
- ORF length:
- 1878
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT ATTCCTCACG GCACTGCCTC TGTTCTGGAT TATGATTTCA GCCTCCCGAG 121 GGGGTCACTG GGGTGCCTGG ATGCCCTCGT CCATCTCGGC CTTCGAAGGC ACGTGCGTCT 181 CCATCCCCTG CCGCTTTGAC TTCCCGGATG AGCTGCGGCC CGCTGTGGTG CATGGTGTCT 241 GGTACTTCAA TAGCCCCTAC CCCAAGAACT ACCCCCCGGT GGTCTTCAAG TCGCGCACCC 301 AAGTAGTCCA CGAGAGCTTC CAGGGCCGCA GCCGCCTCCT GGGGGACCTG GGCCTGCGAA 361 ACTGCACCCT CCTGCTCAGC AACGTCAGCC CCGAGCTGGG CGGGAAGTAC TACTTCCGTG 421 GGGACCTGGG CGGCTACAAC CAGTACACCT TCTCAGAGCA CAGTGTCCTG GATATCGTCA 481 ACACCCCCAA CATCGTGGTG CCCCCAGAGG TGGTGGCAGG CACGGAGGTG GAGGTCAGCT 541 GCATGGTGCC GGACAACTGC CCAGAGCTGC GCCCTGAGCT GAGCTGGCTG GGCCACGAGG 601 GGCTGGGGGA GCCCGCTGTG CTGGGCCGGC TGCGGGAGGA CGAGGGCACC TGGGTGCAGG 661 TGTCACTGCT GCACTTCGTG CCCACGAGGG AGGCCAACGG CCACAGGCTG GGCTGCCAGG 721 CCTCCTTCCC CAACACCACC CTGCAGTTCG AGGGCTACGC CAGCATGGAC GTCAAGTACC 781 CCCCGGTGAT TGTGGAGATG AACTCCTCGG TGGAGGCCAT CGAGGGCTCC CACGTGAGCC 841 TGCTCTGTGG GGCTGACAGC AACCCCCCGC CGCTGCTGAC CTGGATGCGG GACGGGACAG 901 TCCTCCGGGA GGCGGTGGCC GAGAGCCTGC TCCTGGAGCT GGAGGAGGTG ACCCCCGCCG 961 AAGACGGCGT CTATGCCTGC CTGGCCGAGA ATGCCTATGG CCAGGACAAC CGCACCGTGG 1021 GGCTCAGTGT CATGTATGCA CCCTGGAAGC CAACAGTGAA CGGGACAATG GTGGCCGTAG 1081 AGGGGGAGAC GGTCTCTATC TTGTGCTCCA CACAGAGCAA CCCGGACCCT ATTCTCACCA 1141 TCTTCAAGGA GAAGCAGATC CTGTCCACGG TCATCTACGA GAGCGAGCTG CAGCTGGAGC 1201 TGCCGGCCGT GTCACCCGAG GATGATGGAG AGTACTGGTG TGTGGCTGAG AACCAGTATG 1261 GCCAGAGGGC CACTGCCTTC AACCTGTCTG TGGAGTTCGC CCCTGTGCTC CTCCTGGAGT 1321 CCCACTGCGC GGCAGCCCGA GACACGGTGC AGTGCCTGTG CGTGGTGAAG TCCAACCCGG 1381 AGCCGTCCGT GGCCTTTGAG CTGCCATCGC GCAATGTGAC CGTGAACGAG AGCGAGCGGG 1441 AGTTCGTGTA CTCGGAGCGC AGCGGCCTCG TGCTCACCAG CATCCTCACG CTGCGGGGGC 1501 AGGCCCAGGC CCCGCCCCGC GTCATCTGCA CCGCGAGGAA CCTCTATGGC GCCAAGAGCC 1561 TGGAGCTGCC CTTCCAGGGA GCCCATCGAC TGATGTGGGC CAAGATCGGG CCTGTGGGCG 1621 CCGTGGTCGC CTTTGCCATC CTGATTGCCA TCGTCTGCTA CATTACCCAG ACACGCAGGA 1681 AAAAGAACGT GACAGAGAGC CCCAGCTTCT CGGCAGGGGA CAACCCTCCC GTCCTGTTCA 1741 GCAGCGACTT CCGCATCTCT GGGGCACCAG AGAAGTACGA GAGCGAGAGG CGCCTGGGAT 1801 CTGAGAGGAG GCTGCTGGGC CTTCGGGGTG AGCCCCCAGA GCTGGACCTG AGCTATTCTC 1861 ACTCGGACCT GGGGAAACGG CCCACCAAGG ACAGCTACAC GCTGACGGAG GAGCTAGCTG 1921 AGTATGCTGA AATCCGGGTC AAGTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1981 agcattgctt atcaatttgt tgcaacgaac