Construct: ORF ccsbBroadEn_06682

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015041.1_s300c1, BRDN0000386770
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PABPC3 (5042)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5042 PABPC3 poly(A) binding protein cyt... NM_030979.2 99.9% 100% 1224A>G
2 human 26986 PABPC1 poly(A) binding protein cyt... NM_002568.4 94.4% 91.9% (many diffs)
3 human 26986 PABPC1 poly(A) binding protein cyt... XM_005250861.3 94.4% 91.9% (many diffs)
4 human 728773 PABPC1P2 poly(A) binding protein cyt... NR_026904.1 38% (many diffs)
5 human 113218505 MIR10527 microRNA 10527 NR_162118.1 3.2% (many diffs)
6 mouse 18458 Pabpc1 poly(A) binding protein, cy... NM_008774.3 90.8% 91.6% (many diffs)
7 mouse 18458 Pabpc1 poly(A) binding protein, cy... XM_011245339.2 90.8% 91.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1959
ORF length:
1893
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAGAAAG
61TTGGCATGAA CCCCAGCACC CCCAGCTACC CAACGGCCTC GCTCTACGTG GGGGACCTCC
121ACCCCGACGT GACTGAGGCG ATGCTCTACG AGAAGTTCAG CCCGGCAGGG CCCATCCTCT
181CCATCCGGAT CTGCAGGGAC TTGATCACCA GCGGCTCCTC CAACTACGCG TATGTGAACT
241TCCAGCATAC GAAGGACGCG GAGCATGCTC TGGACACCAT GAATTTTGAT GTTATAAAGG
301GCAAGCCAGT ACGCATCATG TGGTCTCAGC GTGATCCATC ACTTCGAAAA AGTGGAGTGG
361GCAACATATT CGTTAAAAAT CTGGATAAGT CCATTAATAA TAAAGCACTG TATGATACAG
421TTTCTGCTTT TGGTAACATC CTTTCGTGTA ACGTGGTTTG TGATGAAAAT GGTTCCAAGG
481GTTATGGATT TGTACACTTT GAGACACACG AAGCAGCTGA AAGAGCTATT AAAAAAATGA
541ACGGAATGCT CCTAAATGGT CGCAAAGTAT TTGTTGGACA ATTTAAGTCT CGTAAAGAAC
601GAGAAGCTGA ACTTGGAGCT AGGGCAAAAG AGTTCCCCAA TGTTTACATC AAGAATTTTG
661GAGAAGACAT GGATGATGAG CGCCTTAAGG ATCTCTTTGG CAAGTTCGGG CCCGCCTTAA
721GTGTGAAAGT AATGACCGAT GAAAGTGGAA AATCCAAAGG ATTTGGATTT GTAAGCTTTG
781AAAGGCATGA AGATGCACAG AAAGCTGTAG ATGAGATGAA TGGAAAGGAG CTCAATGGAA
841AACAAATTTA CGTTGGTCGA GCTCAGAAAA AAGTGGAACG GCAGACGGAA CTTAAGCGCA
901CATTTGAACA GATGAAGCAA GATAGGATCA CCAGATACCA GGTTGTTAAT CTTTATGTGA
961AAAATCTTGA TGATGGTATT GATGATGAAC GTCTCCGGAA AGCGTTTTCT CCATTTGGTA
1021CAATCACTAG TGCAAAGGTT ATGATGGAAG GTGGTCGCAG CAAAGGGTTT GGTTTTGTAT
1081GTTTCTCCTC CCCAGAAGAA GCCACTAAAG CAGTTACAGA AATGAACGGT AGAATTGTGG
1141CCACAAAGCC ATTGTATGTA GCTTTAGCTC AGCGCAAAGA AGAGCGCCAG GCTTACCTCA
1201CTAACGAGTA TATGCAGAGA ATGGCAAGTG TACGAGCTGT GCCCAACCAG CGAGCACCTC
1261CTTCAGGTTA CTTCATGACA GCTGTCCCGC AGACTCAGAA CCATGCTGCA TACTATCCTC
1321CTAGCCAAAT TGCTCGACTA AGACCAAGTC CTCGCTGGAC TGCTCAGGGT GCCAGACCTC
1381ATCCATTCCA AAATAAGCCC AGTGCTATCC GCCCAGGTGC TCCTAGAGTA CCATTTAGTA
1441CTATGAGACC AGCTTCTTCA CAGGTTCCAC GAGTCATGTC AACGCAGCGT GTTGCTAACA
1501CATCAACACA GACAGTGGGT CCACGTCCTG CAGCTGCTGC TGCTGCTGCA GCTACCCCTG
1561CTGTGCGCAC GGTTCCACGG TATAAATATG CTGCGGGAGT TCGCAATCCT CAGCAACATC
1621GTAATGCACA GCCACAAGTT ACAATGCAAC AGCTTGCTGT TCATGTACAA GGTCAGGAAA
1681CTTTGACTGC CTCCAGGTTG GCATCTGCCC CTCCTCAAAA GCAAAAGCAA ATGTTAGGTG
1741AACGGCTCTT TCCTCTTATT CAAGCCATGC ACCCTACTCT TGCTGGGAAA ATCACTGGCA
1801TGTTGTTGGA GATTGATAAT TCAGAACTTC TTTATATGCT CGAGTCTCCA GAGTCACTCC
1861GTTCTAAGGT TGATGAAGCT GTAGCTGTAC TACAAGCCCA CCAAGCTAAA GAGGCTACCC
1921AGAAAGCAGT TAACAGTGCT ACCGGTGTTC CAACTGTTTA CCCAACTTTC TTGTACAAAG
1981Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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