Construct: ORF ccsbBroadEn_06756

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009572.1_s300c1, BRDN0000392123
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PPIA (5478)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5478 PPIA peptidylprolyl isomerase A NM_021130.5 99.7% 99.3% 266T>C
2 human 729739 PPIAP46 peptidylprolyl isomerase A ... NR_045207.1 93.3% (many diffs)
3 human 653598 PPIAL4C peptidylprolyl isomerase A ... NM_001135789.3 91.7% 85.4% (many diffs)
4 human 653505 PPIAL4A peptidylprolyl isomerase A ... NM_001143883.3 91.3% 84.8% (many diffs)
5 human 644591 PPIAL4G peptidylprolyl isomerase A ... NM_001123068.1 91.1% 83.6% (many diffs)
6 human 105371242 PPIAL4H peptidylprolyl isomerase A ... NM_001368128.1 90.9% 83.6% (many diffs)
7 human 730262 PPIAL4E peptidylprolyl isomerase A ... NM_001144032.2 90.7% 83.6% (many diffs)
8 human 728945 PPIAL4F peptidylprolyl isomerase A ... NM_001164262.2 90.7% 83.6% (many diffs)
9 human 645142 PPIAL4D peptidylprolyl isomerase A ... NM_001164261.1 90.5% 83% (many diffs)
10 human 5478 PPIA peptidylprolyl isomerase A XM_024446808.1 88.8% 81.1% (many diffs)
11 human 100192204 PPIAP30 peptidylprolyl isomerase A ... NR_036506.1 71.2% (many diffs)
12 human 5478 PPIA peptidylprolyl isomerase A NM_001300981.2 63.4% 63% 0_1ins180;86T>C
13 human 5478 PPIA peptidylprolyl isomerase A XM_024446809.1 63.4% 63% 0_1ins180;86T>C
14 human 5478 PPIA peptidylprolyl isomerase A XR_002956460.1 28.9% (many diffs)
15 human 284996 RNF149 ring finger protein 149 XR_001738713.2 16.5% (many diffs)
16 mouse 268373 Ppia peptidylprolyl isomerase A NM_008907.1 91.7% 95.1% (many diffs)
17 mouse 668548 Gm9234 predicted pseudogene 9234 XR_869917.3 60.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
561
ORF length:
495
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT CAACCCCACC GTGTTCTTCG ACATTGCCGT CGACGGCGAG CCCTTGGGCC
121GCGTCTCCTT TGAGCTGTTT GCAGACAAGG TCCCAAAGAC AGCAGAAAAT TTTCGTGCTC
181TGAGCACTGG AGAGAAAGGA TTTGGTTATA AGGGTTCCTG CTTTCACAGA ATTATTCCAG
241GGTTTATGTG TCAGGGTGGT GACTTCACAC GCCATAATGG CACTGGTGGC AAGTCCATCT
301ATGGGGAGAA ATTTGAAGAT GAGAACTTCA CCCTAAAGCA TACGGGTCCT GGCATCTTGT
361CCATGGCAAA TGCTGGACCC AACACAAATG GTTCCCAGTT TTTCATCTGC ACTGCCAAGA
421CTGAGTGGTT GGATGGCAAG CATGTGGTGT TTGGCAAAGT GAAAGAAGGC ATGAATATTG
481TGGAGGCCAT GGAGCGCTTT GGGTCCAGGA ATGGCAAGAC CAGCAAGAAG ATCACCATTG
541CTGACTGTGG ACAACTCGAA TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
601attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)