Construct: ORF ccsbBroadEn_06779

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000982.1_s300c1, BRDN0000394679
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PRODH (5625)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5625 PRODH proline dehydrogenase 1 NM_001195226.2 99.7% 99.7% 229T>C;667T>C;1299C>T
2 human 102724788 LOC102724788 proline dehydrogenase 1, mi... NM_001368250.1 99.5% 99.5% (many diffs)
3 human 102724788 LOC102724788 proline dehydrogenase 1, mi... XM_017030169.1 84.4% 69.1% (many diffs)
4 human 102724788 LOC102724788 proline dehydrogenase 1, mi... XM_017030167.1 83.4% 68% (many diffs)
5 human 102724788 LOC102724788 proline dehydrogenase 1, mi... XM_006724936.3 82.7% 69.3% (many diffs)
6 human 5625 PRODH proline dehydrogenase 1 NM_016335.5 81.8% 81.8% (many diffs)
7 human 102724788 LOC102724788 proline dehydrogenase 1, mi... NM_001368249.1 81.6% 81.6% (many diffs)
8 human 102724788 LOC102724788 proline dehydrogenase 1, mi... XM_017030170.1 78.7% 78.8% (many diffs)
9 human 102724788 LOC102724788 proline dehydrogenase 1, mi... XM_024452505.1 78.7% 78.8% (many diffs)
10 human 102724788 LOC102724788 proline dehydrogenase 1, mi... XR_951398.2 65.8% (many diffs)
11 mouse 19125 Prodh proline dehydrogenase XR_001781796.1 51.4% (many diffs)
12 mouse 19125 Prodh proline dehydrogenase XR_001781795.1 48.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1545
ORF length:
1476
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAAGATGACC TTCTATGGGC ATTTTGTAGC CGGGGAGGAC CAGGAGTCCA
121TCCAGCCCCT GCTTCGGCAC TACAGGGCCT TCGGTGTCAG CGCCATCCTG GACTATGGAG
181TGGAGGAGGA CCTGAGCCCC GAGGAGGCAG AGCACAAGGA GATGGAGTCC TGCACCTCAG
241CTGCGGAGAG GGATGGCAGT GGCACGAATA AGCGGGACAA GCAATACCAG GCCCACCGGG
301CCTTCGGGGA CCGCAGGAAT GGTGTCATCA GTGCCCGCAC CTACTTCTAC GCCAATGAGG
361CCAAGTGCGA CAGCCACATG GAGACATTCT TGCGCTGCAT CGAAGCCTCA GGTAGAGTCA
421GCGATGACGG CTTCATAGCC ATTAAGCTCA CAGCACTGGG GAGACCCCAG TTTCTGCTGC
481AGTTCTCAGA GGTGCTGGCC AAGTGGAGGT GCTTCTTTCA CCAAATGGCT GTGGAGCAAG
541GGCAGGCGGG CCTGGCTGCC ATGGACACCA AGCTGGAGGT GGCGGTGCTG CAGGAAAGTG
601TCGCAAAGTT GGGCATCGCA TCCAGGGCTG AGATTGAGGA CTGGTTCACG GCAGAGACCC
661TGGGAGTGTC TGGCACCATG GACCTGCTGG ACTGGAGCAG CCTCATCGAC AGCAGGACCA
721AGCTGTCCAA GCACCTGGTA GTCCCCAACG CACAGACAGG ACAGCTGGAG CCCCTGCTGT
781CCCGGTTCAC TGAGGAGGAG GAGCTACAGA TGACCAGGAT GCTACAGCGG ATGGATGTCC
841TGGCCAAGAA AGCCACAGAG ATGGGCGTGC GGCTGATGGT GGATGCCGAG CAGACCTACT
901TCCAGCCGGC CATCAGCCGC CTGACGCTGG AGATGCAGCG GAAGTTCAAT GTGGAGAAGC
961CGCTCATCTT CAACACATAC CAGTGCTACC TCAAGGATGC CTATGACAAT GTGACCCTGG
1021ACGTGGAGCT GGCTCGCCGT GAGGGCTGGT GTTTTGGGGC CAAGCTGGTG CGGGGCGCAT
1081ACCTGGCCCA GGAGCGAGCC CGTGCGGCAG AGATCGGCTA TGAGGACCCC ATCAACCCCA
1141CGTACGAGGC CACCAACGCC ATGTACCACA GGTGCCTGGA CTACGTGTTG GAGGAGCTGA
1201AGCACAACGC CAAGGCCAAG GTGATGGTGG CCTCCCACAA TGAGGACACA GTGCGCTTTG
1261CACTGCGCAG GATGGAGGAG CTGGGCCTGC ATCCTGCTGA CCACCGGGTG TACTTTGGAC
1321AGCTGCTAGG CATGTGTGAC CAGATCAGCT TCCCGCTGGG CCAGGCTGGC TACCCCGTGT
1381ACAAGTACGT GCCCTATGGC CCCGTGATGG AGGTGCTGCC CTACTTGTCC CGCCGTGCCC
1441TGGAGAACAG CAGCCTCATG AAGGGCACCC ATCGGGAGCG GCAGCTGCTG TGGCTGGAGC
1501TCTTGAGGCG GCTCCGAACT GGCAACCTCT TCCATCGCCC TGCCTTGCCA ACTTTCTTGT
1561ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)