Construct: ORF ccsbBroadEn_06814

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002170.1_s300c1, BRDN0000456812
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PTPN12 (5782)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5782 PTPN12 protein tyrosine phosphatas... NM_002835.4 99.9% 99.8% 964G>A
2 human 5782 PTPN12 protein tyrosine phosphatas... XM_006716073.4 95.8% 95.7% 284_285ins96;868G>A
3 human 5782 PTPN12 protein tyrosine phosphatas... XM_005250518.2 85.2% 83.2% 0_1ins172;36_37ins173;619G>A
4 human 5782 PTPN12 protein tyrosine phosphatas... XM_017012474.2 85.2% 83.2% 0_1ins172;36_37ins173;619G>A
5 human 5782 PTPN12 protein tyrosine phosphatas... NM_001131008.2 84.7% 84.6% 0_1ins357;607G>A
6 human 5782 PTPN12 protein tyrosine phosphatas... NM_001131009.2 83.2% 83.2% 0_1ins390;574G>A
7 human 5782 PTPN12 protein tyrosine phosphatas... XR_001744844.2 66.7% (many diffs)
8 mouse 19248 Ptpn12 protein tyrosine phosphatas... NM_011203.2 84.5% 83.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2406
ORF length:
2340
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GCAAGTGGAG ATCCTGAGGA AATTCATCCA GAGGGTCCAG GCCATGAAGA
121GTCCTGACCA CAATGGGGAG GACAACTTCG CCCGGGACTT CATGCGGTTA AGAAGATTGT
181CTACCAAATA TAGAACAGAA AAGATATATC CCACAGCCAC TGGAGAAAAA GAAGAAAATG
241TTAAAAAGAA CAGATACAAG GACATACTGC CATTTGATCA CAGCCGAGTT AAATTGACAT
301TAAAGACTCC TTCACAAGAT TCAGACTATA TCAATGCAAA TTTTATAAAG GGCGTCTATG
361GGCCAAAAGC ATATGTAGCA ACTCAAGGAC CTTTAGCAAA TACAGTAATA GATTTTTGGA
421GGATGATATG GGAGTATAAT GTTGTGATCA TTGTAATGGC CTGCCGAGAA TTTGAGATGG
481GAAGGAAAAA ATGTGAGCGC TATTGGCCTT TGTATGGAGA AGACCCCATA ACGTTTGCAC
541CATTTAAAAT TTCTTGTGAG GATGAACAAG CAAGAACAGA CTACTTCATC AGGACACTCT
601TACTTGAATT TCAAAATGAA TCTCGTAGGC TGTATCAGTT TCATTATGTG AACTGGCCAG
661ACCATGATGT TCCTTCATCA TTTGATTCTA TTCTGGACAT GATAAGCTTA ATGAGGAAAT
721ATCAAGAACA TGAAGATGTT CCTATTTGTA TTCATTGCAG TGCAGGCTGT GGAAGAACAG
781GTGCCATTTG TGCCATAGAT TATACGTGGA ATTTACTAAA AGCTGGGAAA ATACCAGAGG
841AATTTAATGT ATTTAATTTA ATACAAGAAA TGAGAACACA AAGGCATTCT GCAGTACAAA
901CAAAGGAGCA ATATGAACTT GTTCATAGAG CTATTGCCCA ACTGTTTGAA AAACAGCTAC
961AACTATATGA AATTCATGGA GCTCAGAAAA TTGCTGATGG AGTGAATGAA ATTAACACTG
1021AAAACATGAT CAGCTCCATA GAGCCTGAAA AACAAGATTC TCCTCCTCCA AAACCACCAA
1081GGACCCGCAG TTGCCTTGTT GAAGGGGATG CTAAAGAAGA AATACTGCAG CCACCGGAAC
1141CTCATCCAGT GCCACCCATC TTGACACCTT CTCCCCCTTC AGCTTTTCCA ACAGTCACTA
1201CTGTGTGGCA GGACAATGAT AGATACCATC CAAAGCCAGT GTTGCATATG GTTTCATCAG
1261AACAACATTC AGCAGACCTC AACAGAAACT ATAGTAAATC AACAGAACTT CCAGGGAAAA
1321ATGAATCAAC AATTGAACAG ATAGATAAAA AATTGGAACG AAATTTAAGT TTTGAGATTA
1381AGAAGGTCCC TCTCCAAGAG GGACCAAAAA GTTTTGATGG GAACACACTT TTGAATAGGG
1441GACATGCAAT TAAAATTAAA TCTGCTTCAC CTTGTATAGC TGATAAAATC TCTAAGCCAC
1501AGGAATTAAG TTCAGATCTA AATGTCGGTG ATACTTCCCA GAATTCTTGT GTGGACTGCA
1561GTGTAACACA ATCAAACAAA GTTTCAGTTA CTCCACCAGA AGAATCCCAG AATTCAGACA
1621CACCTCCAAG GCCAGACCGC TTGCCTCTTG ATGAGAAAGG ACATGTAACG TGGTCATTTC
1681ATGGACCTGA AAATGCCATA CCCATACCTG ATTTATCTGA AGGCAATTCC TCAGATATCA
1741ACTATCAAAC TAGGAAAACT GTGAGTTTAA CACCAAGTCC TACAACACAA GTTGAAACAC
1801CTGATCTTGT GGATCATGAT AACACTTCAC CACTCTTCAG AACACCCCTC AGTTTTACTA
1861ATCCACTTCA CTCTGATGAC TCAGACTCAG ATGAAAGAAA CTCTGATGGT GCTGTGACCC
1921AGAATAAAAC TAATATTTCA ACAGCAAGTG CCACAGTTTC TGCTGCCACT AGTACTGAAA
1981GCATTTCTAC TAGGAAAGTA TTGCCAATGT CCATTGCTAG ACATAATATA GCAGGAACAA
2041CACATTCAGG TGCTGAAAAA GATGTTGATG TTAGTGAAGA TTCACCTCCT CCCCTACCTG
2101AAAGAACTCC TGAATCGTTT GTGTTAGCAA GTGAACATAA TACACCTGTA AGATCGGAAT
2161GGAGTGAACT TCAAAGTCAG GAACGATCTG AACAAAAAAA GTCTGAAGGC TTGATAACCT
2221CTGAAAATGA GAAATGTGAT CATCCAGCGG GAGGTATTCA CTATGAAATG TGCATAGAAT
2281GTCCACCTAC TTTCAGTGAC AAGAGAGAAC AAATATCAGA AAATCCAACA GAAGCCACAG
2341ATATTGGTTT TGGTAATCGA TGTGGAAAAC CCAAAGGACC AAGAGATCCA CCTTCAGAAT
2401GGACATGCCC AACTTTCTTG TACAAAGTTG Gcattataag aaagcattgc ttatcaattt
2461gttgcaacga ac

Download FASTA (ORF) (Full)

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