Transcript: Human XR_001744844.2

PREDICTED: Homo sapiens protein tyrosine phosphatase non-receptor type 12 (PTPN12), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PTPN12 (5782)
Length:
3505
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001744844.2
NBCI Gene record:
PTPN12 (5782)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001744844.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000338389 CATAGATTATACGTGGAATTT pLKO_005 1086 3UTR 100% 13.200 18.480 N PTPN12 n/a
2 TRCN0000002830 CAGCCGAGTTAAATTGACATT pLKO.1 573 3UTR 100% 4.950 6.930 N PTPN12 n/a
3 TRCN0000029879 GCAGTGTAGATTGTTACCTTA pLKO.1 2815 3UTR 100% 4.950 6.930 N Ptpn12 n/a
4 TRCN0000002832 GCTTTGCAGGTTATCAGAGAT pLKO.1 3226 3UTR 100% 4.950 6.930 N PTPN12 n/a
5 TRCN0000271689 AGGATGATATGGGAGTATAAT pLKO_005 712 3UTR 100% 15.000 10.500 N Ptpn12 n/a
6 TRCN0000271699 TACAGGGCAAGTAGGTATATA pLKO_005 3053 3UTR 100% 15.000 10.500 N Ptpn12 n/a
7 TRCN0000350977 CCATAACGTTTGCACCATTTA pLKO_005 818 3UTR 100% 13.200 9.240 N PTPN12 n/a
8 TRCN0000002834 GCCATACCCATACCTGATTTA pLKO.1 1987 3UTR 100% 13.200 9.240 N PTPN12 n/a
9 TRCN0000002833 GCCGAGAATTTGAGATGGGAA pLKO.1 755 3UTR 100% 2.640 1.848 N PTPN12 n/a
10 TRCN0000002831 CCACCAGAAGAATCCCAGAAT pLKO.1 1885 3UTR 100% 4.950 2.970 N PTPN12 n/a
11 TRCN0000350976 CCACCAGAAGAATCCCAGAAT pLKO_005 1885 3UTR 100% 4.950 2.970 N PTPN12 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001744844.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06814 pDONR223 100% 66.7% None (many diffs) n/a
2 ccsbBroad304_06814 pLX_304 0% 66.7% V5 (many diffs) n/a
3 TRCN0000481594 GAATTGCCAGGGTCGAAGCCGTTA pLX_317 20.1% 66.7% V5 (many diffs) n/a
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