Construct: ORF ccsbBroadEn_06839
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013413.1_s300c1, BRDN0000396636
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RANGAP1 (5905)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | NM_001278651.2 | 99.9% | 100% | 1548G>C |
| 2 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | NM_001317930.2 | 99.9% | 100% | 1548G>C |
| 3 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | NM_002883.4 | 99.9% | 100% | 1548G>C |
| 4 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | XM_006724289.4 | 99.9% | 100% | 1548G>C |
| 5 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | XM_011530294.3 | 99.9% | 100% | 1548G>C |
| 6 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | XM_011530295.2 | 99.9% | 100% | 1548G>C |
| 7 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | XM_017028893.2 | 99.9% | 100% | 1548G>C |
| 8 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | XM_017028894.2 | 99.9% | 100% | 1548G>C |
| 9 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | XM_017028895.2 | 99.9% | 100% | 1548G>C |
| 10 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | XM_017028896.2 | 99.9% | 100% | 1548G>C |
| 11 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | XM_017028897.1 | 99.9% | 100% | 1548G>C |
| 12 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | XM_017028898.2 | 93.4% | 93.6% | (many diffs) |
| 13 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | XM_005261696.1 | 93.4% | 93.4% | 1_123del;1671G>C |
| 14 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | XM_017028899.1 | 92.2% | 92.3% | 479_480ins135;1413G>C |
| 15 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | XM_005261695.1 | 91.3% | 91.4% | 1_165del;1713G>C |
| 16 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | XM_011530293.1 | 84.3% | 84.4% | 1_165del;644_645ins135;1578G>C |
| 17 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | XM_011530297.1 | 58.6% | 56.8% | (many diffs) |
| 18 | human | 5905 | RANGAP1 | Ran GTPase activating prote... | XR_002958711.1 | 53.3% | (many diffs) | |
| 19 | mouse | 19387 | Rangap1 | RAN GTPase activating prote... | NM_001146174.1 | 85.8% | 88.7% | (many diffs) |
| 20 | mouse | 19387 | Rangap1 | RAN GTPase activating prote... | NM_011241.4 | 85.8% | 88.7% | (many diffs) |
| 21 | mouse | 19387 | Rangap1 | RAN GTPase activating prote... | XM_006520646.3 | 79.4% | 82.1% | (many diffs) |
| 22 | mouse | 19387 | Rangap1 | RAN GTPase activating prote... | XM_011245524.2 | 72.4% | 74.4% | (many diffs) |
| 23 | mouse | 19387 | Rangap1 | RAN GTPase activating prote... | XR_383994.2 | 49.4% | (many diffs) | |
| 24 | mouse | 19387 | Rangap1 | RAN GTPase activating prote... | XR_001781504.1 | 38.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1827
- ORF length:
- 1761
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CTCGGAAGAC ATTGCCAAGC TGGCAGAGAC ACTTGCCAAG ACTCAGGTGG 121 CCGGGGGACA GCTGAGTTTC AAAGGCAAGA GCCTCAAACT CAACACTGCA GAAGATGCTA 181 AAGATGTGAT TAAAGAGATT GAAGACTTTG ACAGCTTGGA GGCTCTGCGT CTGGAAGGCA 241 ACACAGTGGG CGTGGAAGCA GCCAGGGTCA TCGCCAAGGC CTTAGAGAAG AAGTCGGAGT 301 TGAAGCGCTG CCACTGGAGT GACATGTTCA CGGGAAGGCT GCGGACCGAG ATCCCACCAG 361 CCCTGATCTC ACTAGGGGAA GGACTCATCA CAGCTGGGGC TCAGCTGGTG GAGCTGGACT 421 TAAGCGACAA CGCATTCGGG CCCGACGGTG TGCAAGGCTT CGAGGCCCTG CTCAAGAGCT 481 CAGCCTGCTT CACCCTGCAG GAACTCAAGC TCAACAACTG TGGCATGGGC ATTGGCGGCG 541 GCAAGATCCT GGCTGCAGCT CTGACCGAAT GTCACCGGAA ATCCAGTGCC CAAGGCAAGC 601 CTCTGGCCCT GAAGGTCTTT GTGGCTGGCA GAAACCGTCT GGAGAATGAT GGCGCCACTG 661 CCTTGGCAGA AGCTTTTAGG GTCATCGGGA CCCTGGAGGA GGTCCACATG CCACAGAATG 721 GGATCAACCA CCCTGGCATC ACTGCCCTGG CCCAGGCTTT CGCTGTCAAC CCCCTGCTGC 781 GGGTCATCAA CCTGAATGAC AACACCTTCA CTGAGAAGGG CGCCGTGGCC ATGGCCGAGA 841 CCTTGAAGAC CTTGCGGCAG GTGGAGGTGA TTAATTTTGG GGACTGCCTG GTGCGCTCCA 901 AGGGTGCAGT TGCCATTGCA GATGCCATCC GCGGCGGCCT GCCCAAGCTA AAGGAGCTGA 961 ACTTGTCATT CTGTGAAATC AAGAGGGATG CTGCCCTGGC TGTTGCTGAG GCCATGGCAG 1021 ACAAAGCTGA GCTGGAGAAG CTGGACCTGA ATGGCAACAC CCTGGGAGAA GAAGGCTGTG 1081 AACAGCTTCA GGAGGTGCTG GAGGGCTTCA ACATGGCCAA GGTGCTGGCG TCCCTCAGTG 1141 ATGACGAGGA CGAGGAGGAG GAGGAGGAAG GAGAAGAGGA AGAAGAGGAA GCAGAAGAAG 1201 AGGAGGAGGA AGATGAGGAA GAGGAGGAAG AAGAGGAGGA GGAGGAGGAA GAAGAGCCTC 1261 AGCAGCGAGG GCAGGGAGAG AAGTCAGCCA CGCCCTCACG GAAGATTCTG GACCCTAACA 1321 CTGGGGAGCC AGCTCCCGTG CTGTCCTCCC CACCTCCTGC AGACGTCTCC ACCTTCCTGG 1381 CTTTTCCCTC TCCAGAGAAG CTGCTGCGCC TAGGGCCCAA GAGCTCCGTG CTGATAGCCC 1441 AGCAGACTGA CACGTCTGAC CCCGAGAAGG TGGTCTCTGC CTTCCTAAAG GTGTCATCTG 1501 TGTTCAAGGA CGAAGCTACT GTGAGGATGG CAGTGCAGGA TGCAGTAGAT GCCCTGATGC 1561 AGAAGGCTTT CAACTCCTCG TCCTTCAACT CCAACACCTT CCTCACCAGG CTCCTCGTGC 1621 ACATGGGTCT GCTCAAGAGT GAAGACAAGG TCAAGGCCAT TGCCAACCTG TACGGCCCCC 1681 TGATGGCGCT GAACCACATG GTGCAGCAGG ACTATTTCCC CAAGGCCCTT GCACCCCTGC 1741 TGCTGGCGTT CGTGACCAAG CCCAACAGCG CCCTGGAATC CTGCTCCTTC GCCCGCCACA 1801 GTCTGCTGCA GACGCTGTAC AAGGTCTACC CAACTTTCTT GTACAAAGTt ggcattataa 1861 gaaagcattg cttatcaatt tgttgcaacg aac