Transcript: Human XM_005261696.1

PREDICTED: Homo sapiens Ran GTPase activating protein 1 (RANGAP1), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RANGAP1 (5905)
Length:
2963
CDS:
81..1967

Additional Resources:

NCBI RefSeq record:
XM_005261696.1
NBCI Gene record:
RANGAP1 (5905)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005261696.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000312543 GTGAGCTGCTCCGCCATTAAA pLKO_005 2238 3UTR 100% 15.000 21.000 N RANGAP1 n/a
2 TRCN0000312609 GACCGAATGTCACCGGAAATC pLKO_005 701 CDS 100% 10.800 15.120 N RANGAP1 n/a
3 TRCN0000369394 CGGCAGGTGGAGGTGATTAAT pLKO_005 993 CDS 100% 15.000 10.500 N RANGAP1 n/a
4 TRCN0000047331 CTGCCTTCCTAAAGGTGTCAT pLKO.1 1615 CDS 100% 4.950 3.465 N RANGAP1 n/a
5 TRCN0000327665 CTGCCTTCCTAAAGGTGTCAT pLKO_005 1615 CDS 100% 4.950 3.465 N RANGAP1 n/a
6 TRCN0000047330 GAAGATGCTAAAGATGTGATT pLKO.1 309 CDS 100% 4.950 3.465 N RANGAP1 n/a
7 TRCN0000047328 GCAGGAACTCAAGCTCAACAA pLKO.1 635 CDS 100% 4.950 3.465 N RANGAP1 n/a
8 TRCN0000047332 CAAGAGTGAAGACAAGGTCAA pLKO.1 1772 CDS 100% 4.050 2.835 N RANGAP1 n/a
9 TRCN0000327666 CAAGAGTGAAGACAAGGTCAA pLKO_005 1772 CDS 100% 4.050 2.835 N RANGAP1 n/a
10 TRCN0000047329 GAACTTGTCATTCTGTGAAAT pLKO.1 1097 CDS 100% 13.200 7.920 N RANGAP1 n/a
11 TRCN0000363567 GAACTTGTCATTCTGTGAAAT pLKO_005 1097 CDS 100% 13.200 7.920 N RANGAP1 n/a
12 TRCN0000093081 GATGAGGAAGAGGAGGAAGAA pLKO.1 1350 CDS 100% 4.950 2.475 Y Gm5518 n/a
13 TRCN0000413041 AGGAAGAAGAGGAGGAGGAAG pLKO_005 1363 CDS 100% 4.050 2.025 Y Myt1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005261696.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06839 pDONR223 100% 93.4% 93.4% None 1_123del;1671G>C n/a
2 ccsbBroad304_06839 pLX_304 0% 93.4% 93.4% V5 1_123del;1671G>C n/a
3 TRCN0000469610 CCCGCAATTTGAGGTGCCTTATGA pLX_317 19.7% 93.4% 93.4% V5 1_123del;1671G>C n/a
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