Transcript: Mouse XR_001781504.1

PREDICTED: Mus musculus RAN GTPase activating protein 1 (Rangap1), transcript variant X4, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Rangap1 (19387)
Length:
3758
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001781504.1
NBCI Gene record:
Rangap1 (19387)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001781504.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000106239 CGGCCTCGAAGCTCTACGATT pLKO.1 1269 3UTR 100% 1.650 1.320 N Rangap1 n/a
2 TRCN0000323931 CGGCCTCGAAGCTCTACGATT pLKO_005 1269 3UTR 100% 1.650 1.320 N Rangap1 n/a
3 TRCN0000106235 CCTGTGTCATATTGGTCCTTT pLKO.1 2945 3UTR 100% 4.950 3.465 N Rangap1 n/a
4 TRCN0000323932 CCTGTGTCATATTGGTCCTTT pLKO_005 2945 3UTR 100% 4.950 3.465 N Rangap1 n/a
5 TRCN0000106236 GCAGACGCTATACAACATCTA pLKO.1 2801 3UTR 100% 4.950 3.465 N Rangap1 n/a
6 TRCN0000323929 GCAGACGCTATACAACATCTA pLKO_005 2801 3UTR 100% 4.950 3.465 N Rangap1 n/a
7 TRCN0000106238 GACCTCAGTGACAACGCATTT pLKO.1 1474 3UTR 100% 10.800 6.480 N Rangap1 n/a
8 TRCN0000323933 GACCTCAGTGACAACGCATTT pLKO_005 1474 3UTR 100% 10.800 6.480 N Rangap1 n/a
9 TRCN0000106237 GATGTGATTAAGGAGATTGAA pLKO.1 1240 3UTR 100% 5.625 3.375 N Rangap1 n/a
10 TRCN0000323866 GATGTGATTAAGGAGATTGAA pLKO_005 1240 3UTR 100% 5.625 3.375 N Rangap1 n/a
11 TRCN0000047330 GAAGATGCTAAAGATGTGATT pLKO.1 1228 3UTR 100% 4.950 2.970 N RANGAP1 n/a
12 TRCN0000106535 GCCTGGTCTACAAAGTGAGTT pLKO.1 3336 3UTR 100% 4.950 2.475 Y Gad2 n/a
13 TRCN0000135549 GAGGAAGATGAAGAGGATGAA pLKO.1 2254 3UTR 100% 4.950 2.970 N GRWD1 n/a
14 TRCN0000413410 AGGAGGAAGATGAAGAGGAAG pLKO_005 2252 3UTR 100% 4.050 2.025 Y Myt1 n/a
15 TRCN0000181017 GCACATGCCTTTAATCCCAAT pLKO.1 3273 3UTR 100% 4.050 2.025 Y Map6d1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001781504.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06839 pDONR223 100% 38.1% None (many diffs) n/a
2 ccsbBroad304_06839 pLX_304 0% 38.1% V5 (many diffs) n/a
3 TRCN0000469610 CCCGCAATTTGAGGTGCCTTATGA pLX_317 19.7% 38.1% V5 (many diffs) n/a
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