Construct: ORF ccsbBroadEn_06926

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012725.1_s300c1, BRDN0000391794
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SDHA (6389)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6389 SDHA succinate dehydrogenase com... NM_004168.4 99.9% 100% 891T>C
2 human 6389 SDHA succinate dehydrogenase com... XM_011514072.2 95.1% 94.2% (many diffs)
3 human 6389 SDHA succinate dehydrogenase com... NM_001294332.1 92.7% 92.7% 310_311ins144;747T>C
4 human 6389 SDHA succinate dehydrogenase com... NM_001330758.1 87.7% 87.8% 891T>C;1548_1549ins243
5 human 6389 SDHA succinate dehydrogenase com... XM_011514073.2 83.3% 82.3% (many diffs)
6 human 6389 SDHA succinate dehydrogenase com... XM_017009685.2 82.9% 81% (many diffs)
7 human 727956 SDHAP2 succinate dehydrogenase com... NR_003265.3 81.2% (many diffs)
8 human 6389 SDHA succinate dehydrogenase com... XM_024446143.1 76.8% 74.9% (many diffs)
9 human 255812 SDHAP1 succinate dehydrogenase com... NR_003264.2 73.2% (many diffs)
10 human 6389 SDHA succinate dehydrogenase com... XR_002956167.1 36.2% (many diffs)
11 mouse 66945 Sdha succinate dehydrogenase com... NM_023281.1 86.6% 94.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2058
ORF length:
1992
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC GGGGGTCCGG GGCCTGTCGC GGCTGCTGAG CGCTCGGCGC CTGGCGCTGG
121CCAAGGCGTG GCCAACAGTG TTGCAAACAG GAACCCGAGG TTTTCACTTC ACTGTTGATG
181GGAACAAGAG GGCATCTGCT AAAGTTTCAG ATTCCATTTC TGCTCAGTAT CCAGTAGTGG
241ATCATGAATT TGATGCAGTG GTGGTAGGCG CTGGAGGGGC AGGCTTGCGA GCTGCATTTG
301GCCTTTCTGA GGCAGGGTTT AATACAGCAT GTGTTACCAA GCTGTTTCCT ACCAGGTCAC
361ACACTGTTGC AGCACAGGGA GGAATCAATG CTGCTCTGGG GAACATGGAG GAGGACAACT
421GGAGGTGGCA TTTCTACGAC ACCGTGAAGG GCTCCGACTG GCTGGGGGAC CAGGATGCCA
481TCCACTACAT GACGGAGCAG GCCCCCGCCG CCGTGGTCGA GCTAGAAAAT TATGGCATGC
541CGTTTAGCAG AACTGAAGAT GGGAAGATTT ATCAGCGTGC ATTTGGTGGA CAGAGCCTCA
601AGTTTGGAAA GGGCGGGCAG GCCCATCGGT GCTGCTGTGT GGCTGATCGG ACTGGCCACT
661CGCTATTGCA CACCTTATAT GGAAGGTCTC TGCGATATGA TACCAGCTAT TTTGTGGAGT
721ATTTTGCCTT GGATCTCCTG ATGGAGAATG GGGAGTGCCG TGGTGTCATC GCACTGTGCA
781TAGAGGACGG GTCCATCCAT CGCATAAGAG CAAAGAACAC TGTTGTTGCC ACAGGAGGCT
841ACGGGCGCAC CTACTTCAGC TGCACGTCTG CCCACACCAG CACTGGCGAC GGCACGGCCA
901TGATCACCAG GGCAGGCCTT CCTTGCCAGG ACCTAGAGTT TGTTCAGTTC CACCCCACAG
961GCATATATGG TGCTGGTTGT CTCATTACGG AAGGATGTCG TGGAGAGGGA GGCATTCTCA
1021TTAACAGTCA AGGCGAAAGG TTTATGGAGC GATACGCCCC TGTCGCGAAG GACCTGGCGT
1081CTAGAGATGT GGTGTCTCGG TCCATGACTC TGGAGATCCG AGAAGGAAGA GGCTGTGGCC
1141CTGAGAAAGA TCACGTCTAC CTGCAGCTGC ACCACCTACC TCCAGAGCAG CTGGCCACGC
1201GCCTGCCTGG CATTTCAGAG ACAGCCATGA TCTTCGCTGG CGTGGACGTC ACGAAGGAGC
1261CGATCCCTGT CCTCCCCACC GTGCATTATA ACATGGGCGG CATTCCCACC AACTACAAGG
1321GGCAGGTCCT GAGGCACGTG AATGGCCAGG ATCAGATTGT GCCCGGCCTG TACGCCTGTG
1381GGGAGGCCGC CTGTGCCTCG GTACATGGTG CCAACCGCCT CGGGGCAAAC TCGCTCTTGG
1441ACCTGGTTGT CTTTGGTCGG GCATGTGCCC TGAGCATCGA AGAGTCATGC AGGCCTGGAG
1501ATAAAGTCCC TCCAATTAAA CCAAACGCTG GGGAAGAATC TGTCATGAAT CTTGACAAAT
1561TGAGATTTGC TGATGGAAGC ATAAGAACAT CGGAACTGCG ACTCAGCATG CAGAAGTCAA
1621TGCAAAATCA TGCTGCCGTG TTCCGTGTGG GAAGCGTGTT GCAAGAAGGT TGTGGGAAAA
1681TCAGCAAGCT CTATGGAGAC CTAAAGCACC TGAAGACGTT CGACCGGGGA ATGGTCTGGA
1741ACACGGACCT GGTGGAGACC CTGGAGCTGC AGAACCTGAT GCTGTGTGCG CTGCAGACCA
1801TCTACGGAGC AGAGGCACGG AAGGAGTCAC GGGGCGCGCA TGCCAGGGAA GACTACAAGG
1861TGCGGATTGA TGAGTACGAT TACTCCAAGC CCATCCAGGG GCAACAGAAG AAGCCCTTTG
1921AGGAGCACTG GAGGAAGCAC ACCCTGTCCT ATGTGGACGT TGGCACTGGG AAGGTCACTC
1981TGGAATATAG ACCCGTGATC GACAAAACTT TGAACGAGGC TGACTGTGCC ACCGTCCCGC
2041CAGCCATTCG CTCCTACTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
2101gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.