Construct: ORF ccsbBroadEn_06934

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001444.1_s300c1, BRDN0000457123
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SFPQ (6421)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6421 SFPQ splicing factor proline and... NM_005066.3 99.8% 99.4% (many diffs)
2 human 6421 SFPQ splicing factor proline and... XM_005271112.5 99.8% 99.4% (many diffs)
3 human 6421 SFPQ splicing factor proline and... XM_005271113.5 99.8% 99.4% (many diffs)
4 human 6421 SFPQ splicing factor proline and... XM_017002053.2 99.8% 99.4% (many diffs)
5 human 6421 SFPQ splicing factor proline and... XM_017002054.2 99.8% 99.4% (many diffs)
6 human 6421 SFPQ splicing factor proline and... XM_011541950.2 94.7% 91.2% (many diffs)
7 human 6421 SFPQ splicing factor proline and... XM_005271115.4 93.8% 93.2% (many diffs)
8 human 6421 SFPQ splicing factor proline and... NR_136702.1 88.9% (many diffs)
9 human 6421 SFPQ splicing factor proline and... NR_136703.1 88.3% (many diffs)
10 mouse 71514 Sfpq splicing factor proline/glu... NM_023603.3 87.7% 93.6% (many diffs)
11 mouse 71514 Sfpq splicing factor proline/glu... NR_045010.1 78% (many diffs)
12 mouse 71514 Sfpq splicing factor proline/glu... XM_006503406.3 72.8% 77.6% (many diffs)
13 mouse 71514 Sfpq splicing factor proline/glu... XR_867891.2 30.9% (many diffs)
14 mouse 71514 Sfpq splicing factor proline/glu... XR_001784201.1 28.6% (many diffs)
15 mouse 71514 Sfpq splicing factor proline/glu... XR_867890.1 20.6% (many diffs)
16 mouse 71514 Sfpq splicing factor proline/glu... XR_001784200.1 15.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2187
ORF length:
2121
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC TCGGGATCGG TTCCGGAGTC GTGGCGGTGG CGGTGGTGGC TTCCACAGGC
121GTGGAGGAGG CGGCGGCCGC GGCGGCCTCC ACGACTTCCG TTCTCCGCCG CCCGGCATGG
181GCCTCAATCA GAATCGCGGC CCCATGGGTC CTGGCCCGGG CCAGAGCGGC CCTAAGCCTC
241CGATCCCGCC ACCGCCTCCA CACCAACAGC AGCAACAGCC ACCACCGCAG CAGCCACCGC
301CGCAGCAGCC GCCACCGCAT CAGCCGCCGC CGCATCCACA GCCGCATCAG CAGCAGCAGC
361CGCCGCCACC GCCGCAGGAC TCTTCCAAGC CCGTCGTTGC TCAGGGACCC GGCCCCGCTC
421CCGGAGTAGG CAGCACACCA CCAGCCTCCA GCTCGGCCCC GCCCGCCACT CCACCAACCT
481CGGGGGCCCC GCCAGGGTCC GGGCCAGGCC CGACTCCGAC CCCGCCGCCT GCAGTCACCT
541CGGCCCCTCC CGGGGCGCCG CCACCCACCC CGCCAAGCAG CGGGGTCCCT ACCACACCTC
601CTCAGGCCGG AGGCCCGCCG CCTCCGCCCG CGGCAGTCCC GGGCCCGGGT CCAGGGCCTA
661AGCAGGGCCC AGGTCCGGGT GGTCCCAAAG GCGGCAAAAT GCCTGGCGGG CCGAAGCCAG
721GTGGCGGCCC GGGCCTAAGT ACGCCTGGCG GCCACCCCAA GCCGCCGCGT CGAGGCGGCG
781GGGAGCCCCG CGGGGGCCGC CAGCACCACC CGCCCTACCA CCAGCAGCAT CACCAGGGGC
841CCCCGCCCGG CGGGCCCGGC GGCCGCAGCG AGGAGAAGAT CTCGGACTCG GAGGGGTTTA
901AAGCCAATTT GTCTCTCTTG AGGAGGCCTG GAGAGAAAAC TTACACACAG CGATGTCGGT
961TGTTTGTTGG GAATCTACCT GCTGATATCA CGGAGGATGA ATTCAAAAGA CTATTTGCTA
1021AATATGGAGA ACCAGGAGAA GTTTTTATCA ACAAAGGCAA AGGATTCGGA TTTATTAAGC
1081TTGAATCTAG AGCTTTGGCT GAAATTGCCA AAGCCGAACT GGATGATACA CCCATGAGAG
1141GTAGACAGCT TCGAGTTCGC TTTGCCACAC ATGCTGCTGC CCTTTCTGTT CGTAATCTTT
1201CACCTTATGT TTCCAATGAA CTGTTGGAAG AAGCCTTTAG CCAATTTGGT CCTATTGAAA
1261GGGCTGTTGT AATAGTGGAT GATCGTGGAA GATCTACAGG GAAAGGCATT GTTGAATTTG
1321CTTCTAAGCC AGCAGCAAGA AAGGCATTTG AACGATGCAG TGAAGGTGTT TTCTTACTGA
1381CGACAACTCC TCGTCCAGTC ATTGTGGAAC CACTTGAACA ACTAGATGAT GAAGATGGTC
1441TTCCTGAAAA ACTTGCCCAG AAGAATCCAA TGTATCAAAA GGAGAGAGAA ACCCCTACTC
1501GTTTTGCCCA GCATGGCACG TTTGAGTACG AATATTCTCA GCGATGGAAG TCTTTGGATG
1561AAATGGAAAA ACAGCAAAGG GAACAAGTTG AAAAAAACAT GAAAGATGCA AAAGACAAAT
1621TGGAAAGTGA AATGGAAGAT GCCTATCATG AACATCAGGC AAATCTTTTG CGCCAAGATC
1681TGATGAGACG ACAGGAAGAA TTAAGACGCA TGGAAGAACT TCACAATCAA GAAATGCAGA
1741AACGTAAAGA AATGCAATTG AGGCAAGAGG AGGAACGACG TAGAAGAGAG GAAGAGATGA
1801TGATTCGTCA ACGTGAGATG GAAGACCAAA TGAGGCGCCA AAGAGAGGAA AGTTACAGCC
1861GAATGGGCTA CATGGATCCA CGGGAAAGAG ACATGCGAAT GGGTGGCGGA GGAGCAATGA
1921ACATGGGAGA TCCCTATGGT TCAGGAGGCC AGAAATTTCC ACCTCTAGGA GGTGGTGGTG
1981GCATAGGTTA TGAAGCTAAT CCTGGCGTTC CACCAGCAAC CATGAGTGGT TCCATGATGG
2041GAAGTGACAT GCGTACTGAG CGCTTTGGGC AGGGAGGTGC GGGGCCTGTG GGTGGACAGG
2101GTCCTAGAGG AATGGGGCCT GGAACTCCAG CAGGATATGG TAGAGGGAGA GAAGAGTACG
2161AAGGCCCAAA CAAAAAACCC CGATTTTACC CAACTTTCTT GTACAAAGTT GGcattataa
2221gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)