Construct: ORF ccsbBroadEn_06955
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007500.1_s300c1, BRDN0000456590
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC1A3 (6507)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6507 | SLC1A3 | solute carrier family 1 mem... | NM_004172.5 | 99.8% | 99.8% | 67C>A;1446C>A |
| 2 | human | 6507 | SLC1A3 | solute carrier family 1 mem... | XM_005248342.3 | 99.8% | 99.8% | 67C>A;1446C>A |
| 3 | human | 6507 | SLC1A3 | solute carrier family 1 mem... | XM_024446181.1 | 99.8% | 99.8% | 67C>A;1446C>A |
| 4 | human | 6507 | SLC1A3 | solute carrier family 1 mem... | NM_001166695.3 | 91.5% | 91.3% | 67C>A;1289_1290ins135;1311C>A |
| 5 | human | 6507 | SLC1A3 | solute carrier family 1 mem... | XM_024446182.1 | 91.5% | 91.3% | 67C>A;1289_1290ins135;1311C>A |
| 6 | human | 6507 | SLC1A3 | solute carrier family 1 mem... | NM_001289939.1 | 91.3% | 91.3% | 67C>A;180_181ins138;1308C>A |
| 7 | human | 6507 | SLC1A3 | solute carrier family 1 mem... | XM_011514084.2 | 80.1% | 80.2% | 0_1ins321;1125C>A |
| 8 | human | 6507 | SLC1A3 | solute carrier family 1 mem... | NM_001289940.1 | 79.2% | 79.1% | 67C>A;523_524ins336;1110C>A |
| 9 | human | 6507 | SLC1A3 | solute carrier family 1 mem... | NM_001166696.2 | 11.6% | 11% | (many diffs) |
| 10 | mouse | 20512 | Slc1a3 | solute carrier family 1 (gl... | NM_148938.3 | 88.8% | 96.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 65
- ORF end:
- 1691
- ORF length:
- 1626
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttG TACAAAGAAA 61 GTTAATGACT AAAAGCAATG GAGAAGAGCC CAAGATGGGG GGCAGGATGG AGAGATTCCA 121 GCAGGGAGTC AGTAAACGCA CACTTTTGGC CAAGAAGAAA GTGCAGAACA TTACAAAGGA 181 GGATGTTAAA AGTTACCTGT TTCGGAATGC TTTTGTGCTG CTCACAGTCA CCGCTGTCAT 241 TGTGGGTACA ATCCTTGGAT TTACCCTCCG ACCATACAGA ATGAGCTACC GGGAAGTCAA 301 GTACTTCTCC TTTCCTGGGG AACTTCTGAT GAGGATGTTA CAGATGCTGG TCTTACCACT 361 TATCATCTCC AGTCTTGTCA CAGGAATGGC GGCGCTAGAT AGTAAGGCAT CAGGGAAGAT 421 GGGAATGCGA GCTGTAGTCT ATTATATGAC TACCACCATC ATTGCTGTGG TGATTGGCAT 481 AATCATTGTC ATCATCATCC ATCCTGGGAA GGGCACAAAG GAAAACATGC ACAGAGAAGG 541 CAAAATTGTA CGAGTGACAG CTGCAGATGC CTTCCTGGAC TTGATCAGGA ACATGTTCCC 601 TCCAAATCTG GTAGAAGCCT GCTTTAAACA GTTTAAAACC AACTATGAGA AGAGAAGCTT 661 TAAAGTGCCC ATCCAGGCCA ACGAAACGCT TGTGGGTGCT GTGATAAACA ATGTGTCTGA 721 GGCCATGGAG ACTCTTACCC GAATCACAGA GGAGCTGGTC CCAGTTCCAG GATCTGTGAA 781 TGGAGTCAAT GCCCTGGGTC TAGTTGTCTT CTCCATGTGC TTCGGTTTTG TGATTGGAAA 841 CATGAAGGAA CAGGGGCAGG CCCTGAGAGA GTTCTTTGAT TCTCTTAACG AAGCCATCAT 901 GAGACTGGTA GCAGTAATAA TGTGGTATGC CCCCGTGGGT ATTCTCTTCC TGATTGCTGG 961 GAAGATTGTG GAGATGGAAG ACATGGGTGT GATTGGGGGG CAGCTTGCCA TGTACACCGT 1021 GACTGTCATT GTTGGCTTAC TCATTCACGC AGTCATCGTC TTGCCACTCC TCTACTTCTT 1081 GGTAACACGG AAAAACCCTT GGGTTTTTAT TGGAGGGTTG CTGCAAGCAC TCATCACCGC 1141 TCTGGGGACC TCTTCAAGTT CTGCCACCCT ACCCATCACC TTCAAGTGCC TGGAAGAGAA 1201 CAATGGCGTG GACAAGCGCG TCACCAGATT CGTGCTCCCC GTAGGAGCCA CCATTAACAT 1261 GGATGGGACT GCCCTCTATG AGGCTTTGGC TGCCATTTTC ATTGCTCAAG TTAACAACTT 1321 TGAACTGAAC TTCGGACAAA TTATTACAAT CAGCATCACA GCCACAGCTG CCAGTATTGG 1381 GGCAGCTGGA ATTCCTCAGG CGGGCCTGGT CACTATGGTC ATTGTGCTGA CATCTGTCGG 1441 CCTGCCCACT GACGACATCA CGCTCATCAT CGCGGTGGAC TGGTTCCTGG ATCGCCTCCG 1501 GACCACCACA AACGTACTGG GAGACTCCCT GGGAGCTGGG ATTGTGGAGC ACTTGTCACG 1561 ACATGAACTG AAGAACAGAG ATGTTGAAAT GGGTAACTCA GTGATTGAAG AGAATGAAAT 1621 GAAGAAACCA TATCAACTGA TTGCACAGGA CAATGAAACT GAGAAACCCA TCGACAGTGA 1681 AACCAAGATG TACCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc attgcttatc 1741 aatttgttgc aacgaac