Construct: ORF ccsbBroadEn_06958
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007172.1_s300c1, BRDN0000393673
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC1A7 (6512)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6512 | SLC1A7 | solute carrier family 1 mem... | NM_006671.6 | 99.8% | 99.8% | 987T>C;1610A>G;1662T>C |
| 2 | human | 6512 | SLC1A7 | solute carrier family 1 mem... | NM_001287595.2 | 90.3% | 90.3% | (many diffs) |
| 3 | human | 6512 | SLC1A7 | solute carrier family 1 mem... | NM_001287597.2 | 82.1% | 76.3% | (many diffs) |
| 4 | human | 6512 | SLC1A7 | solute carrier family 1 mem... | NR_109858.2 | 61.1% | (many diffs) | |
| 5 | human | 6512 | SLC1A7 | solute carrier family 1 mem... | XM_011542002.2 | 44.7% | 44.7% | (many diffs) |
| 6 | human | 6512 | SLC1A7 | solute carrier family 1 mem... | NM_001287596.2 | 27.6% | 26.4% | (many diffs) |
| 7 | mouse | 242607 | Slc1a7 | solute carrier family 1 (gl... | NM_146255.2 | 85.7% | 90.5% | (many diffs) |
| 8 | mouse | 242607 | Slc1a7 | solute carrier family 1 (gl... | XM_006503088.2 | 79.5% | 81.6% | (many diffs) |
| 9 | mouse | 242607 | Slc1a7 | solute carrier family 1 (gl... | XM_006503090.2 | 64.8% | 68.9% | (many diffs) |
| 10 | mouse | 242607 | Slc1a7 | solute carrier family 1 (gl... | XR_001784144.1 | 60.8% | (many diffs) | |
| 11 | mouse | 242607 | Slc1a7 | solute carrier family 1 (gl... | XM_017320222.1 | 56.8% | 50.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1746
- ORF length:
- 1680
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT GCCGCATGCC ATCTTGGCAC GGGGGAGGGA CGTGTGCAGG CGGAATGGAC 121 TCCTCATCCT GTCTGTGCTG TCTGTCATCG TGGGCTGCCT CCTCGGCTTC TTCTTGAGGA 181 CCCGGCGCCT CTCACCACAG GAAATTAGTT ACTTCCAGTT CCCTGGAGAG CTCCTGATGA 241 GGATGCTGAA GATGATGATC CTGCCACTGG TGGTCTCCAG CTTGATGTCC GGACTTGCCT 301 CCCTGGATGC CAAGACCTCT AGCCGCCTGG GCGTCCTCAC CGTGGCGTAC TACCTGTGGA 361 CCACCTTCAT GGCTGTCATC GTGGGCATCT TCATGGTCTC CATCATCCAC CCAGGCAGCG 421 CGGCCCAGAA GGAGACCACG GAGCAGAGTG GGAAGCCCAT CATGAGCTCA GCCGATGCCC 481 TGTTGGACCT CATCCGGAAC ATGTTCCCAG CCAACCTAGT AGAAGCCACA TTCAAACAGT 541 ACCGCACCAA GACCACCCCA GTTGTCAAGT CCCCCAAGGT GGCACCAGAG GAGGCCCCTC 601 CTCGGCGGAT CCTCATCTAC GGGGTCCAGG AGGAGAATGG CTCCCATGTG CAGAACTTCG 661 CCCTGGACCT GACCCCGCCG CCCGAGGTCG TTTACAAGTC AGAGCCGGGC ACCAGCGATG 721 GCATGAATGT GCTGGGCATC GTCTTCTTCT CTGCCACCAT GGGCATCATG CTGGGCCGCA 781 TGGGTGACAG CGGGGCCCCC CTGGTCAGCT TCTGCCAGTG CCTCAATGAG TCGGTCATGA 841 AGATCGTGGC GGTGGCTGTG TGGTATTTCC CCTTCGGCAT TGTGTTCCTC ATTGCGGGTA 901 AGATCCTGGA GATGGACGAC CCCAGGGCCG TCGGCAAGAA GCTGGGCTTC TACTCAGTCA 961 CCGTGGTGTG CGGGCTGGTG CTCCACGGGC TCTTTATCCT GCCCCTGCTC TACTTCTTCA 1021 TCACCAAGAA GAATCCCATC GTCTTCATCC GCGGCATCCT GCAGGCTCTG CTCATCGCGC 1081 TGGCCACCTC CTCCAGCTCA GCCACACTGC CCATCACCTT CAAGTGCCTG CTGGAGAACA 1141 ACCACATCGA CCGGCGCATC GCTCGCTTCG TGCTGCCCGT GGGTGCCACC ATCAACATGG 1201 ACGGCACTGC GCTCTACGAG GCTGTGGCCG CCATCTTCAT CGCCCAGGTC AACAACTACG 1261 AGCTGGACTT TGGCCAGATC ATCACCATCA GTATCACAGC CACTGCAGCC AGCATTGGGG 1321 CAGCTGGCAT CCCCCAGGCC GGCCTCGTCA CCATGGTCAT CGTGCTCACC TCCGTGGGAC 1381 TGCCCACCGA TGACATCACC CTCATCATTG CCGTTGACTG GGCTCTGGAC CGTTTCCGCA 1441 CCATGATTAA CGTGCTGGGT GATGCGCTGG CAGCGGGGAT CATGGCCCAT ATATGTCGGA 1501 AGGATTTTGC CCGGGACACA GGCACCGAGA AACTGCTGCC CTGCGAGACC AAGCCAGTGA 1561 GCCTCCAGGA GATCGTGGCA GCCCAGCAGA ATGGCTGTGT GAAGAGTGTA GCCGAGGCCT 1621 CCGAGCTCAC CCTGGGCCCC ACCTGCCCCC ACCACGTCCC CGTTCAAGTG GAGCGGGATG 1681 AGGAGCTGCC CGCTGCGAGT CTGAACCACT GCACCATCCA GATCAGCGAG CTGGAGACCA 1741 ATGTCTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 1801 gttgcaacga ac