Construct: ORF ccsbBroadEn_06961

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006693.1_s300c1, BRDN0000395995
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC6A1 (6529)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6529 SLC6A1 solute carrier family 6 mem... NM_001348250.1 99.8% 99.8% 1047C>G;1562C>A
2 human 6529 SLC6A1 solute carrier family 6 mem... NM_003042.4 99.8% 99.8% 1047C>G;1562C>A
3 human 6529 SLC6A1 solute carrier family 6 mem... XM_005265410.5 99.8% 99.8% 1047C>G;1562C>A
4 human 6529 SLC6A1 solute carrier family 6 mem... XM_005265411.5 99.8% 99.8% 1047C>G;1562C>A
5 human 6529 SLC6A1 solute carrier family 6 mem... XM_011534025.3 99.8% 99.8% 1047C>G;1562C>A
6 human 6529 SLC6A1 solute carrier family 6 mem... XM_011534027.3 99.8% 99.8% 1047C>G;1562C>A
7 human 6529 SLC6A1 solute carrier family 6 mem... XM_017007071.2 99.8% 99.8% 1047C>G;1562C>A
8 human 6529 SLC6A1 solute carrier family 6 mem... XM_017007072.2 99.8% 99.8% 1047C>G;1562C>A
9 human 6529 SLC6A1 solute carrier family 6 mem... NM_001348251.1 79.8% 79.7% 0_1ins360;687C>G;1202C>A
10 human 6529 SLC6A1 solute carrier family 6 mem... NM_001348252.1 70.1% 70.1% 0_1ins534;513C>G;1028C>A
11 human 6529 SLC6A1 solute carrier family 6 mem... NM_001348253.1 70.1% 70.1% 0_1ins534;513C>G;1028C>A
12 mouse 232333 Slc6a1 solute carrier family 6 (ne... NM_178703.4 90% 97.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1863
ORF length:
1797
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GACCAACGGC AGCAAGGTGG CCGACGGGCA GATCTCCACC GAGGTCAGCG
121AGGCCCCTGT GGCCAATGAC AAGCCCAAAA CCTTGGTGGT CAAGGTGCAG AAGAAGGCGG
181CAGACCTCCC CGACCGGGAC ACGTGGAAGG GCCGCTTCGA CTTCCTCATG TCCTGTGTGG
241GCTATGCCAT CGGCCTGGGC AACGTCTGGA GGTTCCCCTA TCTCTGCGGG AAAAATGGTG
301GGGGAGCCTT CCTGATCCCC TATTTCCTGA CACTCATCTT TGCGGGGGTC CCACTCTTCC
361TGCTGGAGTG CTCCCTGGGC CAGTACACCT CCATCGGGGG GCTAGGGGTA TGGAAGCTGG
421CTCCTATGTT CAAGGGCGTG GGCCTTGCGG CTGCTGTGCT ATCATTCTGG CTGAACATCT
481ACTACATCGT CATCATCTCC TGGGCCATTT ACTACCTGTA CAACTCCTTC ACCACGACAC
541TGCCGTGGAA ACAGTGCGAC AACCCCTGGA ACACAGACCG CTGCTTCTCC AACTACAGCA
601TGGTCAACAC TACCAACATG ACCAGCGCTG TGGTGGAGTT CTGGGAGCGC AACATGCATC
661AGATGACGGA CGGGCTGGAT AAGCCAGGTC AGATCCGCTG GCCACTGGCC ATCACGCTGG
721CCATCGCCTG GATCCTTGTG TATTTCTGTA TCTGGAAGGG TGTTGGCTGG ACTGGAAAGG
781TGGTCTACTT TTCAGCCACA TACCCCTACA TCATGCTGAT CATCCTGTTC TTCCGTGGAG
841TGACGCTGCC CGGGGCCAAG GAGGGCATCC TCTTCTACAT CACACCCAAC TTCCGCAAGC
901TGTCTGACTC CGAGGTGTGG CTGGATGCGG CAACCCAGAT CTTCTTCTCA TACGGGCTGG
961GCCTGGGGTC CCTGATCGCT CTCGGGAGCT ACAACTCTTT CCACAACAAT GTCTACAGGG
1021ACTCCATCAT CGTCTGCTGC ATCAATTCGT GCACCAGCAT GTTCGCAGGA TTCGTCATCT
1081TCTCCATCGT GGGCTTCATG GCCCATGTCA CGAAGAGGTC CATTGCTGAT GTGGCGGCCT
1141CAGGCCCCGG GCTGGCGTTC CTGGCATACC CAGAGGCGGT GACCCAGCTG CCTATCTCCC
1201CACTCTGGGC CATCCTCTTC TTCTCCATGC TGTTGATGCT GGGCATTGAC AGCCAGTTCT
1261GCACTGTGGA GGGCTTCATC ACAGCCCTGG TGGATGAGTA CCCCAGGCTC CTCCGCAACC
1321GCAGAGAGCT CTTCATTGCT GCTGTCTGCA TCATCTCCTA CCTGATCGGT CTCTCTAACA
1381TCACTCAGGG GGGTATTTAT GTCTTCAAAC TCTTTGACTA CTACTCTGCC AGTGGCATGA
1441GCCTGCTGTT CCTCGTGTTC TTTGAATGTG TCTCTATTTC CTGGTTTTAC GGTGTCAACC
1501GATTCTATGA CAATATCCAA GAGATGGTTG GATCCAGGCC CTGCATCTGG TGGAAACTCT
1561GCTGGTCTTT CTTCACACCA ATCATTGTGG CGGGCGTGTT CATTTTCAGT GCTGTGCAGA
1621TGACGCAACT CACCATGGGA AACTATGTTT TCCCCAAGTG GGGCCAGGGT GTGGGCTGGC
1681TGATGGCTCT GTCTTCCATG GTCCTCATCC CCGGGTACAT GGCCTACATG TTCCTCACCT
1741TAAAGGGCTC CCTGAAGCAG CGCATCCAAG TCATGGTCCA GCCCAGCGAA GACATCGTTC
1801GCCCAGAGAA TGGTCCTGAG CAGCCCCAGG CGGGCAGCTC CACCAGCAAG GAGGCCTACA
1861TCTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1921gcaacgaac

Download FASTA (ORF) (Full)