Transcript: Human NM_001348251.1

Homo sapiens solute carrier family 6 member 1 (SLC6A1), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-26
Taxon:
Homo sapiens (human)
Gene:
SLC6A1 (6529)
Length:
4243
CDS:
521..1960

Additional Resources:

NCBI RefSeq record:
NM_001348251.1
NBCI Gene record:
SLC6A1 (6529)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001348251.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000429875 CTACATGTTCCTCACCTTAAA pLKO_005 1819 CDS 100% 13.200 18.480 N SLC6A1 n/a
2 TRCN0000042874 CAACCGATTCTATGACAATAT pLKO.1 1591 CDS 100% 13.200 9.240 N SLC6A1 n/a
3 TRCN0000042875 CTTCTACATCACACCCAACTT pLKO.1 967 CDS 100% 4.950 3.465 N SLC6A1 n/a
4 TRCN0000042873 GCTATCATTCTGGCTGAACAT pLKO.1 553 CDS 100% 4.950 3.465 N SLC6A1 n/a
5 TRCN0000042877 GTGGAAACTCTGCTGGTCTTT pLKO.1 1645 CDS 100% 4.950 3.465 N SLC6A1 n/a
6 TRCN0000042876 GAGCTACAACTCTTTCCACAA pLKO.1 1081 CDS 100% 4.050 2.835 N SLC6A1 n/a
7 TRCN0000079836 CCTCTTCTACATCACACCCAA pLKO.1 964 CDS 100% 2.640 1.584 N Slc6a1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001348251.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06961 pDONR223 100% 79.8% 79.7% None 0_1ins360;687C>G;1202C>A n/a
2 ccsbBroad304_06961 pLX_304 0% 79.8% 79.7% V5 0_1ins360;687C>G;1202C>A n/a
3 TRCN0000473919 GCATGACATGTAAACATCTAAATG pLX_317 23.6% 79.8% 79.7% V5 0_1ins360;687C>G;1202C>A n/a
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