Construct: ORF ccsbBroadEn_06971

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005832.1_s300c1, BRDN0000392971
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC20A2 (6575)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6575 SLC20A2 solute carrier family 20 me... NM_001257180.2 99.8% 99.6% 1940G>T;1943T>C
2 human 6575 SLC20A2 solute carrier family 20 me... NM_001257181.1 99.8% 99.6% 1940G>T;1943T>C
3 human 6575 SLC20A2 solute carrier family 20 me... NM_006749.5 99.8% 99.6% 1940G>T;1943T>C
4 human 6575 SLC20A2 solute carrier family 20 me... XM_005273613.4 99.8% 99.6% 1940G>T;1943T>C
5 human 6575 SLC20A2 solute carrier family 20 me... XM_017013748.1 99.8% 99.6% 1940G>T;1943T>C
6 human 6575 SLC20A2 solute carrier family 20 me... XM_024447235.1 99.8% 99.6% 1940G>T;1943T>C
7 human 6575 SLC20A2 solute carrier family 20 me... XM_024447236.1 99.8% 99.6% 1940G>T;1943T>C
8 human 6575 SLC20A2 solute carrier family 20 me... XM_005273615.4 92.7% 92.4% (many diffs)
9 human 6575 SLC20A2 solute carrier family 20 me... XM_006716390.4 92.6% 92.4% 286_287ins141;1799G>T;1802T>C
10 human 6575 SLC20A2 solute carrier family 20 me... XM_017013749.2 92.6% 92.4% 286_287ins141;1799G>T;1802T>C
11 human 6575 SLC20A2 solute carrier family 20 me... XM_024447237.1 92.6% 92.4% 286_287ins141;1799G>T;1802T>C
12 human 6575 SLC20A2 solute carrier family 20 me... XM_006716391.4 78.8% 78.6% 0_1ins411;1529G>T;1532T>C
13 human 6575 SLC20A2 solute carrier family 20 me... XM_017013750.2 78.8% 78.6% 0_1ins411;1529G>T;1532T>C
14 human 6575 SLC20A2 solute carrier family 20 me... XM_017013751.2 78.8% 78.6% 0_1ins411;1529G>T;1532T>C
15 human 6575 SLC20A2 solute carrier family 20 me... XM_017013752.2 78.8% 78.6% 0_1ins411;1529G>T;1532T>C
16 mouse 20516 Slc20a2 solute carrier family 20, m... NM_011394.3 82.1% 91% (many diffs)
17 mouse 20516 Slc20a2 solute carrier family 20, m... XM_006509043.2 82.1% 91% (many diffs)
18 mouse 20516 Slc20a2 solute carrier family 20, m... XM_006509044.1 82.1% 91% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2022
ORF length:
1956
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CATGGATGAG TATTTGTGGA TGGTCATTTT GGGTTTCATC ATAGCTTTCA
121TCTTGGCCTT TTCTGTTGGT GCAAACGATG TTGCCAACTC CTTTGGTACA GCCGTGGGCT
181CTGGTGTGGT GACCTTGAGG CAGGCATGCA TTTTAGCTTC AATATTTGAA ACCACCGGCT
241CCGTGTTACT AGGCGCCAAA GTAGGAGAAA CCATTCGCAA AGGTATCATT GACGTGAACC
301TGTACAACGA GACGGTGGAG ACTCTCATGG CTGGGGAAGT TAGTGCCATG GTTGGTTCCG
361CTGTGTGGCA GCTGATTGCT TCCTTCCTGA GGCTTCCAAT CTCAGGAACG CACTGCATTG
421TGGGTTCTAC TATAGGATTC TCACTGGTCG CAATCGGTAC CAAAGGTGTG CAGTGGATGG
481AGCTTGTCAA GATTGTTGCT TCTTGGTTTA TATCTCCACT GTTGTCTGGT TTCATGTCTG
541GCCTGCTGTT TGTACTCATC AGAATTTTCA TCTTAAAAAA GGAAGACCCT GTTCCCAATG
601GCCTCCGGGC ACTCCCAGTA TTCTATGCTG CTACCATAGC AATCAATGTC TTTTCCATCA
661TGTACACAGG AGCACCAGTG CTCGGCCTTG TTCTCCCCAT GTGGGCCATA GCCCTCATTT
721CCTTTGGTGT CGCCCTCCTG TTCGCTTTTT TTGTGTGGCT CTTCGTGTGT CCGTGGATGC
781GGAGGAAAAT AACAGGCAAA TTACAAAAAG AAGGTGCTTT ATCACGAGTA TCTGACGAAA
841GCCTCAGTAA GGTTCAGGAA GCAGAGTCCC CAGTATTTAA AGAGCTACCA GGTGCCAAGG
901CTAATGATGA CAGCACCATC CCGCTCACGG GAGCAGCAGG GGAGACACTG GGGACCTCGG
961AAGGCACTTC TGCGGGCAGC CACCCTCGGG CTGCATACGG AAGAGCACTG TCCATGACCC
1021ATGGCTCTGT GAAATCGCCC ATCTCCAACG GCACCTTCGG CTTCGACGGC CACACCAGGA
1081GCGACGGTCA TGTGTACCAC ACCGTGCACA AAGACTCGGG GCTCTACAAA GATCTGCTGC
1141ACAAAATCCA CATCGACAGG GGCCCCGAGG AGAAGCCAGC CCAGGAAAGC AACTACCGGC
1201TGCTGCGCCG AAACAACAGT TACACCTGCT ACACCGCAGC CATTTGTGGG CTGCCAGTGC
1261ACGCCACCTT TCGAGCTGCG GACTCATCGG CCCCAGAGGA CAGTGAGAAG CTGGTGGGCG
1321ACACCGTGTC CTACTCCAAG AAGAGGCTGC GCTACGACAG CTACTCGAGC TACTGTAACG
1381CGGTGGCAGA GGCGGAGATC GAGGCGGAGG AGGGCGGCGT GGAGATGAAG CTGGCGTCGG
1441AGCTGGCCGA CCCTGACCAG CCGCGAGAGG ACCCTGCAGA GGAGGAGAAG GAGGAGAAGG
1501ACGCACCCGA GGTTCACCTC CTGTTCCATT TCCTGCAGGT CCTCACCGCC TGTTTCGGGT
1561CCTTTGCTCA CGGCGGCAAT GACGTGAGTA ATGCCATCGG TCCCCTGGTA GCCTTGTGGC
1621TGATTTACAA ACAAGGCGGG GTAACGCAAG AAGCAGCTAC ACCCGTCTGG CTGCTGTTTT
1681ATGGAGGAGT TGGAATCTGC ACAGGCCTCT GGGTCTGGGG GAGAAGAGTG ATCCAGACCA
1741TGGGGAAGGA CCTCACTCCC ATCACGCCGT CCAGCGGCTT CACGATCGAG CTGGCCTCAG
1801CCTTCACAGT GGTGATCGCC TCCAACATCG GGCTTCCAGT CAGCACCACG CACTGTAAGG
1861TGGGCTCGGT GGTGGCCGTG GGCTGGATCC GCTCCCGCAA GGCTGTGGAC TGGCGCCTCT
1921TTCGGAACAT CTTCGTGGCC TGGTTCGTGA CCGTCCCTGT GGCTGGGCTG TTCAGCGCTG
1981CTGTCATGGC TCTTCTCATG TATGTGACCC TTCCATATGT GTGCCCAACT TTCTTGTACA
2041AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)