Transcript: Human XM_005273615.4

PREDICTED: Homo sapiens solute carrier family 20 member 2 (SLC20A2), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC20A2 (6575)
Length:
3098
CDS:
439..2277

Additional Resources:

NCBI RefSeq record:
XM_005273615.4
NBCI Gene record:
SLC20A2 (6575)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005273615.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000433539 CACCTTCCCGAGCTAACTTAA pLKO_005 2650 3UTR 100% 13.200 18.480 N SLC20A2 n/a
2 TRCN0000427569 GGCGGCAATGACGTGAGTAAT pLKO_005 1945 CDS 100% 13.200 18.480 N SLC20A2 n/a
3 TRCN0000043073 CAAAGGTATCATTGACGTGAA pLKO.1 651 CDS 100% 4.050 5.670 N SLC20A2 n/a
4 TRCN0000421288 TGTACCACACCGTGCACAAAG pLKO_005 1466 CDS 100% 10.800 7.560 N SLC20A2 n/a
5 TRCN0000043075 GTCATGGCTCTTCTCATGTAT pLKO.1 2432 3UTR 100% 5.625 3.938 N SLC20A2 n/a
6 TRCN0000043077 GCTGCGCCGAAACAACAGTTA pLKO.1 1575 CDS 100% 4.950 3.465 N SLC20A2 n/a
7 TRCN0000043074 CATAGCTTTCATCTTGGCCTT pLKO.1 483 CDS 100% 2.160 1.512 N SLC20A2 n/a
8 TRCN0000043076 CTATGCTGCTACCATAGCAAT pLKO.1 996 CDS 100% 0.495 0.347 N SLC20A2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005273615.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06971 pDONR223 100% 92.7% 92.4% None (many diffs) n/a
2 TRCN0000476345 AACTTACATGAACCCCTCCTAACT pLX_317 15.7% 92.7% 92.4% V5 (many diffs) n/a
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