Transcript: Mouse XM_006509043.2

PREDICTED: Mus musculus solute carrier family 20, member 2 (Slc20a2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Slc20a2 (20516)
Length:
3511
CDS:
345..2315

Additional Resources:

NCBI RefSeq record:
XM_006509043.2
NBCI Gene record:
Slc20a2 (20516)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006509043.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000068441 CGGCGTGCTGTTCATACTAAT pLKO.1 818 CDS 100% 13.200 18.480 N Slc20a2 n/a
2 TRCN0000313518 CGAGACCGTGGAAACGCTAAT pLKO_005 587 CDS 100% 10.800 15.120 N Slc20a2 n/a
3 TRCN0000068442 GAGTTACACAAGAAGCTGCTA pLKO.1 1921 CDS 100% 2.640 2.112 N Slc20a2 n/a
4 TRCN0000313519 GTGGCTTTGTGGCTGATATAT pLKO_005 1890 CDS 100% 15.000 10.500 N Slc20a2 n/a
5 TRCN0000313449 TTGTCGCCTCCTGGTTTATAT pLKO_005 772 CDS 100% 15.000 10.500 N Slc20a2 n/a
6 TRCN0000313517 AGGAATGACGGTCACGTTTAT pLKO_005 1356 CDS 100% 13.200 9.240 N Slc20a2 n/a
7 TRCN0000068440 CCCATCTCCAATGGTACATTT pLKO.1 1317 CDS 100% 13.200 9.240 N Slc20a2 n/a
8 TRCN0000068438 CCACAGCTCATCTTCCAGAAT pLKO.1 2439 3UTR 100% 4.950 3.465 N Slc20a2 n/a
9 TRCN0000317073 CCACAGCTCATCTTCCAGAAT pLKO_005 2439 3UTR 100% 4.950 3.465 N Slc20a2 n/a
10 TRCN0000068439 GCCACTTCTTTCTGGCTTCAT pLKO.1 794 CDS 100% 4.950 3.465 N Slc20a2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006509043.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06971 pDONR223 100% 82.1% 91% None (many diffs) n/a
2 TRCN0000476345 AACTTACATGAACCCCTCCTAACT pLX_317 15.7% 82.1% 91% V5 (many diffs) n/a
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