Construct: ORF ccsbBroadEn_06984
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009508.1_s300c1, BRDN0000395955
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNX1 (6642)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6642 | SNX1 | sorting nexin 1 | NM_003099.5 | 99.9% | 100% | 630G>A |
| 2 | human | 6642 | SNX1 | sorting nexin 1 | NM_001242933.2 | 92.7% | 91.5% | (many diffs) |
| 3 | human | 6642 | SNX1 | sorting nexin 1 | NM_148955.4 | 87.4% | 87.5% | 269_270ins195;435G>A |
| 4 | human | 6642 | SNX1 | sorting nexin 1 | XR_001751380.1 | 73.3% | (many diffs) | |
| 5 | human | 6642 | SNX1 | sorting nexin 1 | XM_005254611.3 | 64.3% | 63.1% | (many diffs) |
| 6 | human | 6642 | SNX1 | sorting nexin 1 | XR_001751381.1 | 19.6% | (many diffs) | |
| 7 | mouse | 56440 | Snx1 | sorting nexin 1 | NM_019727.2 | 89.9% | 94.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1632
- ORF length:
- 1566
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GTCGGGTGGT GGTGGCTGTA GCGCTTCGGA GAGACTGCCT CCGCCCTTCC 121 CCGGCCTGGA GCCGGAGTCC GAGGGGGCGG CCGGGGGATC AGAACCCGAG GCTGGGGACA 181 GCGACACCGA GGGGGAGGAC ATTTTCACCG GCGCCGCGGT GGTCAGTAAA CATCAGTCTC 241 CAAAGATAAC TACATCCCTT CTTCCCATCA ACAATGGCTC CAAAGAAAAT GGGATCCATG 301 AAGAACAAGA CCAAGAGCCA CAGGATCTCT TTGCAGATGC CACAGTGGAG CTATCCTTGG 361 ACAGCACACA AAATAATCAG AAGAAGGTGC TAGCCAAAAC ACTCATTTCT CTTCCTCCTC 421 AGGAAGCCAC AAATTCTTCG AAGCCCCAGC CAACCTATGA GGAGCTAGAG GAAGAAGAAC 481 AGGAGGATCA ATTTGATTTG ACAGTCGGTA TAACTGATCC TGAGAAGATA GGGGATGGTA 541 TGAATGCATA TGTAGCCTAC AAAGTTACAA CACAGACAAG CTTACCATTG TTCAGAAGCA 601 AACAGTTTGC AGTAAAAAGA AGATTTAGTG ACTTTCTGGG TCTTTATGAG AAGCTTTCCG 661 AGAAGCACTC TCAGAATGGC TTCATTGTCC CTCCACCCCC GGAGAAGAGC CTCATAGGGA 721 TGACAAAAGT GAAAGTTGGG AAGGAAGATT CTTCTTCTGC AGAATTTCTT GAAAAACGGA 781 GGGCCGCTTT AGAAAGGTAC CTTCAGAGGA TTGTAAATCA TCCTACCATG TTACAGGACC 841 CTGACGTCAG AGAGTTCTTG GAAAAAGAAG AGCTGCCACG TGCCGTGGGT ACCCAGACAT 901 TGAGTGGTGC TGGTCTCCTC AAGATGTTCA ACAAAGCCAC AGATGCCGTC AGCAAAATGA 961 CCATCAAGAT GAATGAATCA GACATTTGGT TTGAGGAGAA GCTCCAGGAG GTAGAGTGTG 1021 AGGAGCAGCG CTTACGGAAA CTGCATGCTG TTGTAGAAAC TCTAGTCAAC CATAGGAAAG 1081 AGCTAGCGCT GAACACAGCC CAGTTTGCAA AGAGTCTAGC CATGCTTGGG AGCTCTGAGG 1141 ACAACACGGC ATTGTCACGG GCACTCTCCC AGCTGGCTGA GGTGGAAGAA AAAATTGAGC 1201 AGCTCCACCA GGAACAGGCC AACAATGACT TCTTCCTCCT TGCTGAGCTC CTGAGTGACT 1261 ACATTCGCCT CCTGGCCATA GTCCGCGCTG CCTTCGACCA GCGCATGAAG ACATGGCAGC 1321 GCTGGCAGGA TGCCCAAGCC ACACTGCAGA AGAAGCGGGA GGCCGAGGCT CGGCTGCTGT 1381 GGGCCAACAA GCCTGATAAG CTGCAGCAGG CCAAGGACGA GATCCTCGAG TGGGAGTCTC 1441 GGGTGACTCA ATATGAAAGG GACTTCGAGA GGATTTCAAC AGTGGTCCGA AAAGAAGTGA 1501 TACGGTTTGA GAAAGAGAAA TCCAAGGACT TCAAGAACCA CGTGATCAAG TACCTTGAGA 1561 CACTCCTTTA CTCACAGCAG CAGCTGGCAA AGTACTGGGA AGCCTTCCTT CCTGAGGCAA 1621 AGGCCATCTC CTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1681 caatttgttg caacgaac