Construct: ORF ccsbBroadEn_07004
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006199.1_s300c1, BRDN0000394727
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SS18 (6760)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6760 | SS18 | SS18 subunit of BAF chromat... | NM_001007559.3 | 99.9% | 99.7% | 239C>T |
| 2 | human | 6760 | SS18 | SS18 subunit of BAF chromat... | NM_001308201.1 | 94.4% | 94.2% | 0_1ins69;170C>T |
| 3 | human | 6760 | SS18 | SS18 subunit of BAF chromat... | XM_011526145.1 | 94.4% | 94.2% | 0_1ins69;170C>T |
| 4 | human | 6760 | SS18 | SS18 subunit of BAF chromat... | NM_005637.3 | 92.5% | 92.3% | 239C>T;879_880ins93 |
| 5 | human | 6760 | SS18 | SS18 subunit of BAF chromat... | XM_011526147.2 | 87.4% | 87.3% | 0_1ins156;83C>T |
| 6 | human | 6760 | SS18 | SS18 subunit of BAF chromat... | XM_011526148.2 | 87.4% | 87.3% | 0_1ins156;83C>T |
| 7 | human | 6760 | SS18 | SS18 subunit of BAF chromat... | XM_011526149.2 | 87.4% | 87.3% | 0_1ins156;83C>T |
| 8 | human | 6760 | SS18 | SS18 subunit of BAF chromat... | XM_011526150.2 | 87.4% | 87.3% | 0_1ins156;83C>T |
| 9 | human | 6760 | SS18 | SS18 subunit of BAF chromat... | XM_011526151.2 | 87.4% | 87.3% | 0_1ins156;83C>T |
| 10 | human | 6760 | SS18 | SS18 subunit of BAF chromat... | XM_006722527.2 | 80.3% | 80.3% | 0_1ins246 |
| 11 | human | 6760 | SS18 | SS18 subunit of BAF chromat... | XM_011526152.2 | 80% | 79.9% | 0_1ins156;83C>T;723_724ins93 |
| 12 | mouse | 268996 | Ss18 | SS18, nBAF chromatin remode... | NM_009280.2 | 91.8% | 95.9% | (many diffs) |
| 13 | mouse | 268996 | Ss18 | SS18, nBAF chromatin remode... | NM_001161369.1 | 84.4% | 88.5% | (many diffs) |
| 14 | mouse | 268996 | Ss18 | SS18, nBAF chromatin remode... | XM_006525948.2 | 76.1% | 80.1% | (many diffs) |
| 15 | mouse | 268996 | Ss18 | SS18, nBAF chromatin remode... | NM_001161370.1 | 75.6% | 78.9% | (many diffs) |
| 16 | mouse | 268996 | Ss18 | SS18, nBAF chromatin remode... | NM_001161371.1 | 68.2% | 71.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1323
- ORF length:
- 1254
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCTGTGGCT TTCGCGGCCC CGAGGCAGCG AGGCAAGGGG GAGATCACTC 121 CCGCTGCGAT TCAGAAGATG TTGGATGACA ATAACCATCT TATTCAGTGT ATAATGGACT 181 CTCAGAATAA AGGAAAGACC TCAGAGTGTT CTCAGTATCA GCAGATGTTG CACACAAACT 241 TGGTATACCT TGCTACAATA GCAGATTCTA ATCAAAATAT GCAGTCTCTT TTACCAGCAC 301 CACCCATACA GAATATGCCT ATGGGTCCTG GAGGGATGAA TCAGAGCGGC CCTCCCCCAC 361 CTCCACGCTC TCACAACATG CCTTCAGATG GAATGGTAGG TGGGGGTCCT CCTGCACCGC 421 ACATGCAGAA CCAGATGAAC GGCCAGATGC CTGGGCCTAA CCATATGCCT ATGCAGGGAC 481 CTGGACCCAA TCAACTCAAT ATGACAAACA GTTCCATGAA TATGCCTTCA AGTAGCCATG 541 GATCCATGGG AGGTTACAAC CATTCTGTGC CATCATCACA GAGCATGCCA GTACAGAATC 601 AGATGACAAT GAGTCAGGGA CAACCAATGG GAAACTATGG TCCCAGACCA AATATGAGTA 661 TGCAGCCAAA CCAAGGTCCA ATGATGCATC AGCAGCCTCC TTCTCAGCAA TACAATATGC 721 CACAGGGAGG CGGACAGCAT TACCAAGGAC AGCAGCCACC TATGGGAATG ATGGGTCAAG 781 TTAACCAAGG CAATCATATG ATGGGTCAGA GACAGATTCC TCCCTATAGA CCTCCTCAAC 841 AGGGCCCACC ACAGCAGTAC TCAGGCCAGG AAGACTATTA CGGGGACCAA TACAGTCATG 901 GTGGACAAGG TCCTCCAGAA GGCATGAACC AGCAATATTA CCCTGATGGT CATAATGATT 961 ACGGTTATCA GCAACCGTCG TATCCTGAAC AAGGCTACGA TAGGCCTTAT GAGGATTCCT 1021 CACAACATTA CTACGAAGGA GGAAATTCAC AGTATGGCCA ACAGCAAGAT GCATACCAGG 1081 GACCACCTCC ACAACAGGGA TATCCACCCC AGCAGCAGCA GTACCCAGGG CAGCAAGGTT 1141 ACCCAGGACA GCAGCAGGGC TACGGTCCTT CACAGGGTGG TCCAGGTCCT CAGTATCCTA 1201 ACTACCCACA GGGACAAGGT CAGCAGTATG GAGGATATAG ACCAACACAG CCTGGACCAC 1261 CACAGCCACC CCAGCAGAGG CCTTATGGAT ATGACCAGGG ACAGTATGGA AATTACCAGC 1321 AGTTGCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1381 gcaacgaac