Construct: ORF ccsbBroadEn_07032

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010669.1_s300c1, BRDN0000395154
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CNTN2 (6900)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6900 CNTN2 contactin 2 NM_001346083.2 99.9% 99.9% 89G>A
2 human 6900 CNTN2 contactin 2 NM_005076.5 99.9% 99.9% 89G>A
3 human 6900 CNTN2 contactin 2 XM_024449389.1 97.9% 96.5% (many diffs)
4 human 6900 CNTN2 contactin 2 XM_017002198.1 87.5% 83.3% 89G>A;3014_3341del;3449_3561del
5 human 6900 CNTN2 contactin 2 XM_024449386.1 85.9% 80.6% (many diffs)
6 human 6900 CNTN2 contactin 2 XM_017002199.2 85.7% 81.1% (many diffs)
7 human 6900 CNTN2 contactin 2 XM_024449387.1 78% 72.2% (many diffs)
8 human 6900 CNTN2 contactin 2 XM_024449388.1 78% 72.2% (many diffs)
9 human 6900 CNTN2 contactin 2 NR_144350.2 38.6% (many diffs)
10 mouse 21367 Cntn2 contactin 2 NM_177129.5 85.8% 90.2% (many diffs)
11 mouse 21367 Cntn2 contactin 2 XM_006529362.2 85.8% 90.2% (many diffs)
12 mouse 21367 Cntn2 contactin 2 XR_878318.2 29.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3189
ORF length:
3120
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGGACAGCC ACCAGGAGGA AGCCACACCT GCTGCTGGTA GCTGCTGTGG
121CCCTTGTCTC CTCTTCAGCT TGGAGTTCAG CCCTGGAATC CCAAACCACC TTCGGGCCTG
181TCTTTGAAGA CCAGCCCCTC AGTGTGCTAT TCCCAGAGGA GTCCACGGAG GAGCAGGTGT
241TGCTGGCATG CCGCGCCCGG GCCAGCCCTC CAGCCACCTA TCGGTGGAAG ATGAATGGTA
301CCGAGATGAA GCTGGAGCCA GGTTCCCGTC ACCAGCTGGT GGGGGGCAAC CTGGTCATCA
361TGAACCCCAC CAAGGCACAG GATGCCGGGG TCTACCAGTG CCTGGCCTCC AACCCAGTGG
421GCACCGTTGT CAGCAGGGAG GCCATCCTCC GCTTCGGCTT TCTGCAGGAA TTCTCCAAGG
481AGGAGCGAGA CCCAGTGAAA GCTCATGAAG GCTGGGGGGT GATGTTGCCC TGTAACCCAC
541CTGCCCACTA CCCAGGCTTG TCCTACCGCT GGCTCCTCAA CGAGTTCCCC AACTTCATCC
601CGACGGACGG GCGTCACTTC GTGTCCCAGA CCACAGGGAA CCTGTACATT GCCCGAACCA
661ATGCCTCAGA CCTGGGCAAC TACTCCTGTT TGGCCACCAG CCACATGGAC TTCTCCACCA
721AGAGCGTCTT CAGCAAGTTT GCTCAGCTCA ACCTGGCTGC TGAAGATACC CGGCTCTTTG
781CACCCAGCAT CAAGGCCCGG TTCCCAGCAG AGACCTATGC ACTGGTGGGG CAGCAGGTCA
841CCCTGGAGTG CTTCGCCTTT GGGAACCCTG TCCCCCGGAT CAAGTGGCGC AAAGTGGACG
901GCTCCCTGTC CCCGCAGTGG ACCACAGCTG AGCCCACCCT GCAGATCCCC AGCGTCAGCT
961TTGAGGATGA GGGCACCTAC GAGTGTGAGG CGGAGAACTC CAAGGGCCGA GACACCGTGC
1021AGGGCCGCAT CATCGTGCAG GCTCAGCCTG AGTGGCTAAA AGTGATCTCG GACACAGAGG
1081CTGACATTGG CTCCAACCTG CGTTGGGGCT GTGCAGCCGC CGGCAAGCCC CGGCCTACAG
1141TGCGCTGGCT GCGGAACGGG GAGCCTCTGG CCTCCCAGAA CCGGGTGGAG GTGTTGGCTG
1201GGGACCTGCG GTTCTCCAAG CTGAGCCTGG AAGACTCGGG CATGTACCAG TGTGTGGCAG
1261AGAATAAGCA CGGTACCATC TACGCCAGCG CCGAGCTAGC CGTGCAAGCA CTCGCCCCTG
1321ACTTCAGGCT GAATCCCGTG AGGCGTCTGA TCCCCGCGGC CCGCGGGGGA GAGATCCTTA
1381TCCCCTGCCA GCCCCGGGCA GCTCCAAAGG CCGTGGTGCT CTGGAGCAAA GGCACGGAGA
1441TTTTGGTCAA CAGCAGCAGA GTGACTGTAA CTCCAGATGG CACCTTGATC ATAAGAAACA
1501TCAGCCGGTC AGATGAAGGC AAATACACCT GCTTTGCTGA GAACTTCATG GGCAAAGCCA
1561ACAGCACTGG AATCCTATCT GTGCGAGATG CAACCAAAAT CACTCTAGCC CCCTCAAGTG
1621CCGACATCAA CTTGGGTGAC AACCTGACCC TACAGTGCCA TGCCTCCCAC GACCCCACCA
1681TGGACCTCAC CTTCACCTGG ACCCTGGACG ACTTCCCCAT CGACTTTGAT AAGCCTGGAG
1741GGCACTACCG GAGAACTAAT GTGAAGGAGA CCATTGGGGA TCTGACCATC CTGAACGCCC
1801AGCTGCGCCA TGGGGGGAAG TACACGTGCA TGGCCCAGAC GGTGGTGGAC AGCGCGTCCA
1861AGGAGGCCAC AGTCCTGGTC CGAGGTCCGC CAGGTCCCCC AGGAGGTGTG GTGGTGAGGG
1921ACATTGGCGA CACCACCATC CAGCTCAGCT GGAGCCGTGG CTTCGACAAC CACAGCCCCA
1981TCGCTAAGTA CACCCTGCAA GCTCGCACTC CACCTGCAGG GAAGTGGAAG CAGGTTCGGA
2041CCAATCCTGC AAACATCGAG GGCAATGCCG AGACTGCACA GGTGCTGGGC CTCACCCCCT
2101GGATGGACTA TGAGTTCCGG GTCATAGCCA GCAACATTCT GGGCACTGGG GAGCCTAGTG
2161GGCCCTCCAG CAAAATCCGG ACCAGGGAAG CAGCCCCCTC GGTGGCACCC TCAGGACTCA
2221GCGGAGGAGG TGGAGCCCCC GGAGAGCTCA TCGTCAACTG GACGCCCATG TCACGGGAGT
2281ACCAGAACGG AGACGGCTTC GGCTACCTGC TGTCCTTCCG CAGGCAGGGC AGCACTCACT
2341GGCAGACCGC CCGGGTGCCT GGCGCCGATG CCCAGTACTT TGTCTACAGC AACGAGAGCG
2401TCCGGCCCTA CACGCCCTTT GAGGTCAAGA TCCGCAGCTA CAACCGCCGC GGGGATGGGC
2461CCGAGAGCCT CACTGCACTC GTGTACTCAG CTGAGGAAGA GCCCAGGGTG GCCCCTACCA
2521AGGTGTGGGC CAAAGGGGTC TCATCCTCAG AGATGAACGT GACCTGGGAA CCCGTGCAGC
2581AGGACATGAA TGGTATCCTC CTGGGGTATG AGATCCGCTA CTGGAAAGCT GGGGACAAAG
2641AAGCAGCTGC GGACCGAGTG AGGACAGCAG GGCTGGACAC CAGTGCCCGA GTCAGCGGCC
2701TGCATCCCAA CACCAAGTAC CATGTGACCG TGAGGGCCTA CAACCGGGCT GGCACTGGGC
2761CTGCCAGCCC TTCTGCCAAC GCCACGACCA TGAAGCCCCC TCCGCGGCGA CCTCCTGGCA
2821ACATCTCCTG GACTTTCTCA AGCTCTAGTC TTAGCATTAA GTGGGACCCT GTGGTCCCTT
2881TCCGAAATGA GTCTGCAGTC ACCGGCTATA AGATGCTGTA CCAGAATGAC TTACACCTGA
2941CTCCCACGCT CCACCTCACC GGCAAGAACT GGATAGAAAT CCCAGTGCCT GAAGACATTG
3001GCCATGCCCT GGTACAAATT CGGACCACAG GGCCCGGAGG GGATGGGATC CCTGCAGAAG
3061TCCACATCGT GAGGAATGGA GGCACAAGCA TGATGGTGGA GAACATGGCA GTCCGCCCAG
3121CACCACACCC TGGCACCGTC ATTTCCCACT CCGTGGCGAT GCTGATCCTC ATAGGCTCCC
3181TGGAGCTCTT GCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
3241tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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