Construct: ORF ccsbBroadEn_07050

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001059.1_s300c1, BRDN0000397030
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TFAP2A (7020)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7020 TFAP2A transcription factor AP-2 a... NM_001032280.3 99.9% 100% 1239C>T
2 human 7020 TFAP2A transcription factor AP-2 a... NM_001042425.2 97.4% 97.6% (many diffs)
3 human 7020 TFAP2A transcription factor AP-2 a... NM_001372066.1 97.4% 96.5% (many diffs)
4 human 7020 TFAP2A transcription factor AP-2 a... XM_011514833.2 87.3% 84.4% (many diffs)
5 human 7020 TFAP2A transcription factor AP-2 a... XM_006715175.2 87.2% 87.2% (many diffs)
6 human 7020 TFAP2A transcription factor AP-2 a... XM_017011232.1 82.3% 81.5% (many diffs)
7 mouse 21418 Tfap2a transcription factor AP-2, ... NM_001122948.2 94.3% 98.6% (many diffs)
8 mouse 21418 Tfap2a transcription factor AP-2, ... XM_006516903.3 92.5% 96.7% (many diffs)
9 mouse 21418 Tfap2a transcription factor AP-2, ... NM_001301674.1 92.3% 95.6% (many diffs)
10 mouse 21418 Tfap2a transcription factor AP-2, ... NM_011547.4 92.3% 95.6% (many diffs)
11 mouse 21418 Tfap2a transcription factor AP-2, ... XM_006516902.3 92% 96.3% (many diffs)
12 mouse 21418 Tfap2a transcription factor AP-2, ... XM_017315479.1 86.7% 89.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1359
ORF length:
1293
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT AGTTCACAGT TTTTCAGCCA TGGACCGTCA CGACGGCACC AGCAACGGGA
121CGGCACGGTT GCCCCAGCTG GGCACTGTAG GTCAATCTCC CTACACGAGC GCCCCGCCGC
181TGTCCCACAC CCCCAATGCC GACTTCCAGC CCCCATACTT CCCCCCACCC TACCAGCCTA
241TCTACCCCCA GTCGCAAGAT CCTTACTCCC ACGTCAACGA CCCCTACAGC CTGAACCCCC
301TGCACGCCCA GCCGCAGCCG CAGCACCCAG GCTGGCCCGG CCAGAGGCAG AGCCAGGAGT
361CTGGGCTCCT GCACACGCAC CGGGGGCTGC CTCACCAGCT GTCGGGCCTG GATCCTCGCA
421GGGACTACAG GCGGCACGAG GACCTCCTGC ACGGCCCACA CGCGCTCAGC TCAGGACTCG
481GAGACCTCTC GATCCACTCC TTACCTCACG CCATCGAGGA GGTCCCGCAT GTAGAAGACC
541CGGGTATTAA CATCCCAGAT CAAACTGTAA TTAAGAAAGG CCCCGTGTCC CTGTCCAAGT
601CCAACAGCAA TGCCGTCTCC GCCATCCCTA TTAACAAGGA CAACCTCTTC GGCGGCGTGG
661TGAACCCCAA CGAAGTCTTC TGTTCAGTTC CGGGTCGCCT CTCGCTCCTC AGCTCCACCT
721CGAAGTACAA GGTCACGGTG GCGGAAGTGC AGCGGCGGCT CTCACCACCC GAGTGTCTCA
781ACGCGTCGCT GCTGGGCGGA GTGCTCCGGA GGGCGAAGTC TAAAAATGGA GGAAGATCTT
841TAAGAGAAAA ACTGGACAAA ATAGGATTAA ATCTGCCTGC AGGGAGACGT AAAGCTGCCA
901ACGTTACCCT GCTCACATCA CTAGTAGAGG GAGAAGCTGT CCACCTAGCC AGGGACTTTG
961GGTACGTGTG CGAAACCGAA TTTCCTGCCA AAGCAGTAGC TGAATTTCTC AACCGACAAC
1021ATTCCGATCC CAATGAGCAA GTGACAAGAA AAAACATGCT CCTGGCTACA AAACAGATAT
1081GCAAAGAGTT CACCGACCTG CTGGCTCAGG ACCGATCTCC CCTGGGGAAC TCACGGCCCA
1141ACCCCATCCT GGAGCCCGGC ATCCAGAGCT GCTTGACCCA CTTCAACCTC ATCTCCCACG
1201GCTTCGGCAG CCCCGCGGTG TGTGCCGCGG TCACGGCCCT GCAGAACTAT CTCACCGAGG
1261CCCTCAAGGC CATGGACAAA ATGTACCTCA GCAACAACCC CAATAGCCAC ACGGACAACA
1321ACGCCAAAAG CAGTGACAAA GAGGAGAAGC ACAGAAAGTG CCCAACTTTC TTGTACAAAG
1381Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)