Construct: ORF ccsbBroadEn_07066

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017854.1_s300c1, BRDN0000389311
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
THRA (7067)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7067 THRA thyroid hormone receptor alpha NM_001190919.1 99.9% 99.7% 1470_1471insC
2 human 7067 THRA thyroid hormone receptor alpha NM_003250.6 99.9% 99.7% 1470_1471insC
3 human 7067 THRA thyroid hormone receptor alpha NM_001190918.2 91.9% 91.8% 1108_1109ins117;1353_1354insC
4 human 7067 THRA thyroid hormone receptor alpha NM_199334.5 81.8% 77.4% (many diffs)
5 mouse 21833 Thra thyroid hormone receptor alpha NM_001313983.1 95.5% 96.9% (many diffs)
6 mouse 21833 Thra thyroid hormone receptor alpha NM_178060.4 78.4% 76.8% (many diffs)
7 mouse 21833 Thra thyroid hormone receptor alpha XR_001779972.1 44.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1539
ORF length:
1473
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA ACAGAAGCCA AGCAAGGTGG AGTGTGGGTC AGACCCAGAG GAGAACAGTG
121CCAGGTCACC AGATGGAAAG CGAAAAAGAA AGAACGGCCA ATGTTCCCTG AAAACCAGCA
181TGTCAGGGTA TATCCCTAGT TACCTGGACA AAGACGAGCA GTGTGTCGTG TGTGGGGACA
241AGGCAACTGG TTATCACTAC CGCTGTATCA CTTGTGAGGG CTGCAAGGGC TTCTTTCGCC
301GCACAATCCA GAAGAACCTC CATCCCACCT ATTCCTGCAA ATATGACAGC TGCTGTGTCA
361TTGACAAGAT CACCCGCAAT CAGTGCCAGC TGTGCCGCTT CAAGAAGTGC ATCGCCGTGG
421GCATGGCCAT GGACTTGGTT CTAGATGACT CGAAGCGGGT GGCCAAGCGT AAGCTGATTG
481AGCAGAACCG GGAGCGGCGG CGGAAGGAGG AGATGATCCG ATCACTGCAG CAGCGACCAG
541AGCCCACTCC TGAAGAGTGG GATCTGATCC ACATTGCCAC AGAGGCCCAT CGCAGCACCA
601ATGCCCAGGG CAGCCATTGG AAACAGAGGC GGAAATTCCT GCCCGATGAC ATTGGCCAGT
661CACCCATTGT CTCCATGCCG GACGGAGACA AGGTGGACCT GGAAGCCTTC AGCGAGTTTA
721CCAAGATCAT CACCCCGGCC ATCACCCGTG TGGTGGACTT TGCCAAAAAA CTGCCCATGT
781TCTCCGAGCT GCCTTGCGAA GACCAGATCA TCCTCCTGAA GGGGTGCTGC ATGGAGATCA
841TGTCCCTGCG GGCGGCTGTC CGCTACGACC CTGAGAGCGA CACCCTGACG CTGAGTGGGG
901AGATGGCTGT CAAGCGGGAG CAGCTCAAGA ATGGCGGCCT GGGCGTAGTC TCCGACGCCA
961TCTTTGAACT GGGCAAGTCA CTCTCTGCCT TTAACCTGGA TGACACGGAA GTGGCTCTGC
1021TGCAGGCTGT GCTGCTAATG TCAACAGACC GCTCGGGCCT GCTGTGTGTG GACAAGATCG
1081AGAAGAGTCA GGAGGCGTAC CTGCTGGCGT TCGAGCACTA CGTCAACCAC CGCAAACACA
1141ACATTCCGCA CTTCTGGCCC AAGCTGCTGA TGAAGGAGAG AGAAGTGCAG AGTTCGATTC
1201TGTACAAGGG GGCAGCGGCA GAAGGCCGGC CGGGCGGGTC ACTGGGCGTC CACCCGGAAG
1261GACAGCAGCT TCTCGGAATG CATGTTGTTC AGGGTCCGCA GGTCCGGCAG CTTGAGCAGC
1321AGCTTGGTGA AGCGGGAAGT CTCCAAGGGC CGGTTCTTCA GCACCAGAGC CCGAAGAGCC
1381CGCAGCAGCG TCTCCTGGAG CTGCTCCACC GAAGCGGAAT TCTCCATGCC CGAGCGGTCT
1441GTGGGGAAGA CGACAGCAGT GAGGCGGACT CCCCGAGCTC CTCTGAGGAG GAACCGGAGG
1501TCTGCGAGGA CCTGGCAGGC AATGCAGCCT CTCCCCTGCC CAACTTTCTT GTACAAAGTt
1561ggcattataa gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)

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