Construct: ORF ccsbBroadEn_07132

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015191.1_s300c1, BRDN0000385580
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
VSNL1 (7447)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7447 VSNL1 visinin like 1 NM_001366803.1 99.8% 99.4% 16A>T
2 human 7447 VSNL1 visinin like 1 NM_001366806.1 99.8% 99.4% 16A>T
3 human 7447 VSNL1 visinin like 1 NM_003385.5 99.8% 99.4% 16A>T
4 human 51440 HPCAL4 hippocalcin like 4 NM_001282396.1 80.6% 89% (many diffs)
5 human 51440 HPCAL4 hippocalcin like 4 NM_016257.4 80.6% 89% (many diffs)
6 human 51440 HPCAL4 hippocalcin like 4 XM_017001447.1 80.6% 89% (many diffs)
7 human 7447 VSNL1 visinin like 1 NM_001366804.1 70.6% 54% (many diffs)
8 human 7447 VSNL1 visinin like 1 NM_001366805.1 62.1% 61.7% 16A>T;160_161ins216
9 mouse 26950 Vsnl1 visinin-like 1 NM_012038.4 91.6% 99.4% (many diffs)
10 mouse 170638 Hpcal4 hippocalcin-like 4 NM_174998.4 81.1% 89% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
639
ORF length:
573
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GAAGCAGAAT TGCAAACTGG CCCCTGAAGT GATGGAGGAC CTGGTGAAGA
121GCACAGAGTT TAATGAGCAT GAACTCAAGC AGTGGTACAA AGGATTTCTC AAGGACTGTC
181CAAGTGGGAG GCTAAATCTC GAGGAATTTC AGCAGCTCTA TGTGAAGTTC TTTCCTTATG
241GAGACGCCTC CAAGTTTGCC CAGCATGCCT TCCGAACCTT CGACAAGAAT GGGGACGGCA
301CCATTGACTT CCGAGAGTTC ATCTGCGCTC TGTCCATCAC CTCCAGGGGC AGCTTTGAGC
361AGAAGCTGAA CTGGGCCTTC AATATGTATG ACCTGGATGG TGATGGCAAG ATCACCCGAG
421TGGAGATGCT GGAGATCATC GAGGCTATCT ACAAAATGGT AGGCACTGTG ATCATGATGA
481AAATGAATGA GGATGGCCTG ACGCCTGAGC AGCGAGTAGA CAAGATTTTC AGCAAGATGG
541ATAAGAACAA AGATGACCAG ATTACACTGG ATGAATTCAA AGAAGCTGCA AAGAGCGACC
601CTTCCATTGT ATTACTTCTG CAGTGCGACA TCCAGAAATG CCCAACTTTC TTGTACAAAG
661Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)