Transcript: Human NM_001366806.1

Homo sapiens visinin like 1 (VSNL1), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-09-26
Taxon:
Homo sapiens (human)
Gene:
VSNL1 (7447)
Length:
1845
CDS:
225..800

Additional Resources:

NCBI RefSeq record:
NM_001366806.1
NBCI Gene record:
VSNL1 (7447)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001366806.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000055466 GACCCTTCCATTGTATTACTT pLKO.1 756 CDS 100% 5.625 7.875 N VSNL1 n/a
2 TRCN0000415751 CGTATCTCCTTGATTACATAA pLKO_005 1140 3UTR 100% 13.200 10.560 N VSNL1 n/a
3 TRCN0000415817 ATGTGCTGCAAAGAGTTATAT pLKO_005 1091 3UTR 100% 15.000 10.500 N VSNL1 n/a
4 TRCN0000104715 GCCTTAATTCTTACCTCATTT pLKO.1 1344 3UTR 100% 13.200 9.240 N Vsnl1 n/a
5 TRCN0000428025 TGTCCAAGTGGGAGGCTAAAT pLKO_005 336 CDS 100% 13.200 9.240 N VSNL1 n/a
6 TRCN0000055467 ACAGAGTTTAATGAGCATGAA pLKO.1 282 CDS 100% 4.950 3.465 N VSNL1 n/a
7 TRCN0000055465 CTATGTGAAGTTCTTTCCTTA pLKO.1 377 CDS 100% 4.950 3.465 N VSNL1 n/a
8 TRCN0000055464 GCATGAACTCAAGCAGTGGTA pLKO.1 296 CDS 100% 2.640 1.848 N VSNL1 n/a
9 TRCN0000055463 CCAGATTACACTGGATGAATT pLKO.1 716 CDS 100% 0.000 0.000 N VSNL1 n/a
10 TRCN0000162548 CACACACACACACACAAATAT pLKO.1 892 3UTR 100% 15.000 7.500 Y KAAG1 n/a
11 TRCN0000166364 CACACACACACACACACACAA pLKO.1 888 3UTR 100% 4.950 2.475 Y KAAG1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001366806.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07132 pDONR223 100% 99.8% 99.4% None 16A>T n/a
2 ccsbBroad304_07132 pLX_304 0% 99.8% 99.4% V5 16A>T n/a
3 TRCN0000478956 GGGCGAGAATCGAAAAATCGCACT pLX_317 60% 99.8% 99.4% V5 16A>T n/a
4 ccsbBroadEn_08291 pDONR223 100% 80.6% 89% None (many diffs) n/a
5 ccsbBroad304_08291 pLX_304 0% 80.6% 89% V5 (many diffs) n/a
6 TRCN0000467506 CTTTGTACGCTATGCCTAGTGATC pLX_317 62.5% 80.6% 89% V5 (many diffs) n/a
Download CSV