Construct: ORF ccsbBroadEn_07136

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012543.1_s300c1, BRDN0000398584
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WNT9A (7483)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7483 WNT9A Wnt family member 9A NM_003395.4 99.9% 100% 153T>C
2 human 7483 WNT9A Wnt family member 9A XM_011544271.2 80.8% 80.8% 0_1ins210
3 mouse 216795 Wnt9a wingless-type MMTV integrat... NM_139298.2 89.1% 98% (many diffs)
4 mouse 216795 Wnt9a wingless-type MMTV integrat... XM_006532855.2 88% 96.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1164
ORF length:
1095
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCTGGATGGG TCCCCGCTGG CGCGCTGGCT GGCCGCGGCC TTCGGGCTGA
121CGCTGCTGCT CGCCGCGCTG CGCCCTTCGG CCGCCTACTT CGGGCTGACG GGCAGCGAGC
181CCCTGACCAT CCTCCCGCTG ACCCTGGAGC CAGAGGCGGC CGCCCAGGCG CACTACAAGG
241CCTGCGACCG GCTGAAGCTG GAGCGGAAGC AGCGGCGCAT GTGCCGCCGG GACCCGGGCG
301TGGCAGAGAC GCTGGTGGAG GCCGTGAGCA TGAGTGCGCT CGAGTGCCAG TTCCAGTTCC
361GCTTTGAGCG CTGGAACTGC ACGCTGGAGG GCCGCTACCG GGCCAGCCTG CTCAAGCGAG
421GCTTCAAGGA GACTGCCTTC CTCTATGCCA TCTCCTCGGC TGGCCTGACG CACGCACTGG
481CCAAGGCGTG CAGCGCGGGC CGCATGGAGC GCTGTACCTG CGATGAGGCA CCCGACCTGG
541AGAACCGTGA GGCCTGGCAG TGGGGGGGCT GCGGAGACAA CCTTAAGTAC AGCAGCAAGT
601TCGTCAAGGA ATTCCTGGGC AGACGGTCAA GCAAGGATCT GCGAGCCCGT GTGGACTTCC
661ACAACAACCT CGTGGGTGTG AAGGTGATCA AGGCTGGGGT GGAGACCACC TGCAAGTGCC
721ACGGCGTGTC AGGCTCATGC ACGGTGCGGA CCTGCTGGCG GCAGTTGGCG CCTTTCCATG
781AGGTGGGCAA GCATCTGAAG CACAAGTATG AGACGGCACT CAAGGTGGGC AGCACCACCA
841ATGAAGCTGC CGGCGAGGCA GGTGCCATCT CCCCACCACG GGGCCGTGCC TCGGGGGCAG
901GTGGCAGCGA CCCGCTGCCC CGCACTCCAG AGCTGGTGCA CCTGGATGAC TCGCCTAGCT
961TCTGCCTGGC TGGCCGCTTC TCCCCGGGCA CCGCTGGCCG TAGGTGCCAC CGTGAGAAGA
1021ACTGCGAGAG CATCTGCTGT GGCCGCGGCC ATAACACACA GAGCCGGGTG GTGACAAGGC
1081CCTGCCAGTG CCAGGTGCGT TGGTGCTGCT ATGTGGAGTG CAGGCAGTGC ACGCAGCGTG
1141AGGAGGTCTA CACCTGCAAG GGCTTGCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1201agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)