Transcript: Human NM_003395.4

Homo sapiens Wnt family member 9A (WNT9A), mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
WNT9A (7483)
Length:
4005
CDS:
46..1143

Additional Resources:

NCBI RefSeq record:
NM_003395.4
NBCI Gene record:
WNT9A (7483)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_003395.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000062077 CTGCGGAGACAACCTTAAGTA pLKO.1 546 CDS 100% 5.625 7.875 N WNT9A n/a
2 TRCN0000426431 TTCCGCTTTGAGCGCTGGAAC pLKO_005 334 CDS 100% 1.350 1.080 N WNT9A n/a
3 TRCN0000062074 CAAGTATGAGACGGCACTCAA pLKO.1 780 CDS 100% 4.950 3.465 N WNT9A n/a
4 TRCN0000062073 GCAGCAAGTTCGTCAAGGAAT pLKO.1 569 CDS 100% 4.950 3.465 N WNT9A n/a
5 TRCN0000437617 GTGGGTGTGAAGGTGATCAAG pLKO_005 649 CDS 100% 4.950 3.465 N WNT9A n/a
6 TRCN0000062075 TGAGAAGAACTGCGAGAGCAT pLKO.1 990 CDS 100% 2.640 1.848 N WNT9A n/a
7 TRCN0000436084 GCAGACGGTCAAGCAAGGATC pLKO_005 596 CDS 100% 1.350 0.945 N WNT9A n/a
8 TRCN0000062076 CCTGGATGACTCGCCTAGCTT pLKO.1 918 CDS 100% 1.000 0.700 N WNT9A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_003395.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07136 pDONR223 100% 99.9% 100% None 153T>C n/a
2 ccsbBroad304_07136 pLX_304 0% 99.9% 100% V5 153T>C n/a
3 TRCN0000481446 CGCACGCACCATTTCGTCACGGCG pLX_317 37.1% 99.9% 100% V5 153T>C n/a
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